LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste9g00743	ATGATGGCCCCAACAAAGGTGAAACTTGCATTTATAGATAATGATGCTAAAAGGAAGACAACATATAAGAAAAGGAAGAATTCACTGCTAAAGAAGACAGAAGAACTCAGCACCCTTTGTGGCCTTCAAGCATGTGCCATAGTTTATGGTCCAAATGATGATGAACCAAAGATTTGGCCATCAGCATCAGGTGTTCAAAATGTGTTGGCAAAGTTCAGGAGTGAACCCAAATCAGAGCAAAGCAAGAGGATGGAGAATCAAGAGAGTCTCATTGCACAAAGTATAGTGAAGGGTAGAAAGAAGATCCAGGAACTTGTGCAAGAGAATAAGCACAATGAGATGTGTTTGTTCTTGTTTCAGTGCCTTAAATTAGGGAATTTTGAGCTACATGATAACAAAGCTACTTCGGTAGATTTTAACATTCTTTCATCTTTGATTGAAAAGAACCTTTATAACATTAGTAAAAGGTTGGAATGGGTTAAAGTACAACCCCTTATGCAAGCAGCAACACATGAAGTGGCACTACATGAGGATGGAAATGGATTAAATATGAATGCTAACACCAAGCAAAGCCAACAGTTCATTAATTTTCTTAATGTATGTTAA	606	0.3729	MMAPTKVKLAFIDNDAKRKTTYKKRKNSLLKKTEELSTLCGLQACAIVYGPNDDEPKIWPSASGVQNVLAKFRSEPKSEQSKRMENQESLIAQSIVKGRKKIQELVQENKHNEMCLFLFQCLKLGNFELHDNKATSVDFNILSSLIEKNLYNISKRLEWVKVQPLMQAATHEVALHEDGNGLNMNANTKQSQQFINFLNVC	201

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste9g00743	201	CDD	MADS_SRF_like	3	86	IPR033897	GO:0000981\|GO:0000987\|GO:0045944
	Pste9g00743	201	PANTHER	MADS BOX PROTEIN	6	120	-	-
	Pste9g00743	201	Gene3D	-	14	96	IPR036879	GO:0003677\|GO:0046983
	Pste9g00743	201	ProSiteProfiles	MADS-box domain profile.	2	52	IPR002100	GO:0003677\|GO:0046983
	Pste9g00743	201	PRINTS	MADS domain signature	24	39	IPR002100	GO:0003677\|GO:0046983
	Pste9g00743	201	PRINTS	MADS domain signature	4	24	IPR002100	GO:0003677\|GO:0046983
	Pste9g00743	201	SMART	madsneu2	2	61	IPR002100	GO:0003677\|GO:0046983
	Pste9g00743	201	SUPERFAMILY	SRF-like	5	94	IPR036879	GO:0003677\|GO:0046983
	Pste9g00743	201	FunFam	agamous-like MADS-box protein AGL80	14	98	-	-
	Pste9g00743	201	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	11	53	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste9g00743	Pste-Chr9	3867289	3867894	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste9g00743	2	161	Type I MADS-box Gene Family	AT5G48670	45.342	5.63e-38	132

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Pste9g00743		SRF-TF	4e-16	No_clan