Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00732 TTTTTTGTTCTGCTCTCGCTTTCCCTCTCATCTAACAAGTACACCACCATTGATGCATTTTCTGAAGCATTCGAAAATTCAACTTCAATTTCAGTTCAGTTCTTGTTCCACCTTTTTACCCTTTAAGCAATTGAAGCACTGCACAAAGCTTCTGCTTTTCACTATTTGTTTTTTCCAAAACCCTAACGTGGATTAACCGAACCCTCTTCTTCTGCATTCTTTTTCGCCATGACTGATTCTGAGGCCAATCTCACTGACCCATCTCTTGCTACTGACGCTGATTCACCTAATGATGTAGGAGATGATGTCAAGTTGAGATCTAGGGACCAAAGACTGGCTCTGCCAGGTGAGCCCAAGTGTATTATATGTGGCCGCTATGGTGAATACATATGTGATGAAACTGATGATGATGTTTGCAGTTTCGAGTGCAAACAAGCACTGCTTAGCAGGATTGCAAAACCGTCATCTCTTGGAAGTCTTCCACCACCTAAACATATTCCAGGAGCTGATGAGTGCTTTTATGTCAGAGATGCTGACTCTAAATCAGGGACTGCATCTATGGCTAGTGATCTTAGAAAGAAACTTGACATTCATGTGAAGGGTGATGTAGTGGCACCGGTTTTGTCATTCTCTGCCTGTAACCTCCCTGACAAGCTTCTCCACAATATAGAAGCAGCAGGATATGACATGCCTACACCTGTCCAGATGCAGGCAATTCCTGCTGCTTTGACGGGAAAAAGCATGCTCATTTTAGCCGATACAGGATCTGGGAAGTCTGCTTCATTTCTTATTCCGATAATTTCTCGATGTGCAATTAGTCGTCGACAATATGTTTCAGATAAGAAGCCTTTAGTCCTGGTGTTAACACCTACCAGAGAGCTCTGTATACAGGTTGAAGAGCTTGCTAAGTTGCTTGGCAAGGGGTTGCCTTTCAAAACTGCTCTTGTGGTTGGTGGTGAGGCCATGGCTGGACAACTCTATCGCATTCAACAAGGGGTGGAATTGATTGTAGGAACCCCAGGAAGGCTTGTGGATCTTTTAACAAAGCATGAGATTGACTTAGATGATGTGATGACTTTTGTTGTGGATGAGGTGGACTGTATGCTGCAAAGGGGCTTTAGAGATCAGGTCATGCAGATATATAGGGCTCTTTCACAACCTCAGGTCTTGATGTATTCTGCAACAATGTCTAATGATTTAGAGAAGTTGATTAACACTTTTGCGAAAGGTACAGTGGTTATCTCTGTTGGAGAACCTAATATACCAAATAAGGCCGTGAAGCAGCTAGCTATTTGGGTTGAGTCAAAGCAAAAGAAACAGAAGCTGTTTGAAATTTTGGCTAGTAAGAAGCATTTTAAGCCACCTGTTGTGGTATATGTGGGCTCTAGACTTGGGGCAGATCTCCTGGCCAATGCAATTACAGTTGCCACAGGAATTAAAACAATTTCAATTCATGGGGAGAAGTCTATGAAGGAAAGGAGAGAAATAATGCAGTCCTTTTTAGTGGGTGAGGTCCCAGTGGTTGTGGCTACTGGTGTTTTGGGTAGGGGGGTTGATCTACTAGGTGTAAGACAAGTGATTGTATTTGACATGCCTAATTCCATTAAGGAATATGTACATCAGATTGGAAGAGCATCTAGAATGGGAGAGGAAGGTCAAGGCATAGTTTTTGTGAATGAGGAGAATAAGAATGTCTTTGCAGAATTAGTTGATGTTCTGAAATCTTGCGGTGCAGCTGTGCCTCCGGAGCTTGCCAATTCACGGTATGCTTCTGGATTTTTCTCTGGTGGCAAGGGTTCAAAGAAGAGAAAACATACAAGATGAAGTTTCTTATTACTGGCTTAAATCCAGCCTTGATCTTGATGTTGTCAACTTATACATGTATATGTCATACTTTTGAAGGATGAAAATTTTTTCATACCAAAATATCATATATTATCGGTAAGCTTTCGG 1953 0.4194 MTDSEANLTDPSLATDADSPNDVGDDVKLRSRDQRLALPGEPKCIICGRYGEYICDETDDDVCSFECKQALLSRIAKPSSLGSLPPPKHIPGADECFYVRDADSKSGTASMASDLRKKLDIHVKGDVVAPVLSFSACNLPDKLLHNIEAAGYDMPTPVQMQAIPAALTGKSMLILADTGSGKSASFLIPIISRCAISRRQYVSDKKPLVLVLTPTRELCIQVEELAKLLGKGLPFKTALVVGGEAMAGQLYRIQQGVELIVGTPGRLVDLLTKHEIDLDDVMTFVVDEVDCMLQRGFRDQVMQIYRALSQPQVLMYSATMSNDLEKLINTFAKGTVVISVGEPNIPNKAVKQLAIWVESKQKKQKLFEILASKKHFKPPVVVYVGSRLGADLLANAITVATGIKTISIHGEKSMKERREIMQSFLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQGIVFVNEENKNVFAELVDVLKSCGAAVPPELANSRYASGFFSGGKGSKKRKHTR 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00732 531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 487 IPR027417 -
Pste9g00732 531 Gene3D - 24 80 - -
Pste9g00732 531 Gene3D - 341 514 IPR027417 -
Pste9g00732 531 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 132 160 IPR014014 GO:0003724
Pste9g00732 531 SMART ultradead3 151 353 IPR014001 -
Pste9g00732 531 Gene3D - 98 340 IPR027417 -
Pste9g00732 531 SMART helicmild6 391 473 IPR001650 -
Pste9g00732 531 MobiDBLite consensus disorder prediction 1 26 - -
Pste9g00732 531 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 129 499 - -
Pste9g00732 531 Pfam Helicase conserved C-terminal domain 362 473 IPR001650 -
Pste9g00732 531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 340 IPR027417 -
Pste9g00732 531 CDD SF2_C_DEAD 350 482 - -
Pste9g00732 531 Pfam DEAD/DEAH box helicase 156 327 IPR011545 GO:0003676|GO:0005524
Pste9g00732 531 MobiDBLite consensus disorder prediction 1 16 - -
Pste9g00732 531 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 163 338 IPR014001 -
Pste9g00732 531 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 512 IPR001650 -
Pste9g00732 531 Pfam HIT zinc finger 42 68 IPR007529 -
Pste9g00732 531 FunFam DEAD-box ATP-dependent RNA helicase 41 24 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00732 Pste-Chr9 3829568 3832650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00732 133 510 Eukaryotic Initiation Factors Gene Family AT1G72730 32.552 1.31e-55 190