Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00707 GGCAGTTGCCACAGCCATGGTATGGTAAGAGAACATTGTGACATCAAATAGTTGCGTGCAGGGTCAGTTGGTGAGGTGTTCCTGGTCAAATCGAGGAGGAAAATAACCTCAAAAAAGTGTGAAACGACACAGCCAAAGCACGAAATCAGCCCCACAAGTTGTTCTTCAAGCCACGGACTTGAAAGTTTGTCAAGGAAGCAATGGAGAACAATCATCTGAGAGATACAATGGAAGAAGAGCCAAAGATTCATTTGCCACCAGGATTCAGGTTTCATCCAACTGATGAAGAACTCATCACTTACTACCTCTCACAGAAGGTTCTTGACAGCTGCTTCTGTGCAAGAGCCATTGGGGAGGCTGATTTGAACAAATGTGAACCATGGGATTTGCCTTGGATGGCCAAAATGGGTGAAAAGGAGTGGTATTTTTTCTGTGTGAGAGACAGAAAATACCCAACTGGTCAAAGGACAAATAGGGCCACTTGTGCTGGCTACTGGAAGGCCACAGGCAAAGACAGAGAAATTTACAAGGCAGAGGCACTGATTGGAATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCCCCACATGGTGAAAAAACAAACTGGGTCATGCATGAATACAGATTAGAAAATGACCATTCTATGCTCAATCCACCCAAAGTAGTCATGAATGATTGGGCCATCTGCAGGATTTTTCAGAAGAGTAATAGTGGGAAGAAAATGCACATTTCTGGGCTGGAGAGGTTCAGCACCTTTGGAAAGGACATGCCTTCATTGATGGGTTCTTCTCCACAAAACAACAGTGAAACCAAACCAGTTATGGGGGAGTCATCACAGGTCACCTCTTTCTCTGATCCAAACCAAAGTGAGGACCAAAGGGCAAAAGATGAAAACATAGTTGAAAGCTTTCAATCTCTCTTGGCACCTTCATATTCTTCAAACCCCTCTGATATTTCCCCTGCCTCATGGACTTTTCCCAAATCTGCCCCTACTATGTCCCACCAACCACTCCAAATTGGGAACTCTCACTGCTCAAATTATTTCATGCCTCAGGAACAGTCCATGTTGGGGATGTTGATTGAAAACCATGGATCAGGTGCTAGCCAAAGAACTCAGAAAGCTCAGGATAAAGACTTTGATGCTGACATGTCCTCTGTGATGTACAACAATGAAATGTTTCTAAGATCGTTTGTGAATCAGGAATATTCATCACCTTCTGTGGGACAAGTGTATTCTAGTGGCCTTTGGGGATTTTAAAGAAGGGCGAGGATGCTATATGCAGTTCGAAATCAGAGAAACTTTAGGGATTAATAATATCATACATGTAAAAATATTGCATGTTGCATATTGCATTTAAGTTAATATTATCCTACAAAGTACAGTAAATGGATGTTATAGTTTTCCAAAGTTGTATGGTCGAC 1423 0.423 MENNHLRDTMEEEPKIHLPPGFRFHPTDEELITYYLSQKVLDSCFCARAIGEADLNKCEPWDLPWMAKMGEKEWYFFCVRDRKYPTGQRTNRATCAGYWKATGKDREIYKAEALIGMKKTLVFYKGRAPHGEKTNWVMHEYRLENDHSMLNPPKVVMNDWAICRIFQKSNSGKKMHISGLERFSTFGKDMPSLMGSSPQNNSETKPVMGESSQVTSFSDPNQSEDQRAKDENIVESFQSLLAPSYSSNPSDISPASWTFPKSAPTMSHQPLQIGNSHCSNYFMPQEQSMLGMLIENHGSGASQRTQKAQDKDFDADMSSVMYNNEMFLRSFVNQEYSSPSVGQVYSSGLWGF 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00707 352 Pfam No apical meristem (NAM) protein 19 143 IPR003441 GO:0003677|GO:0006355
Pste9g00707 352 MobiDBLite consensus disorder prediction 190 222 - -
Pste9g00707 352 ProSiteProfiles NAC domain profile. 18 168 IPR003441 GO:0003677|GO:0006355
Pste9g00707 352 MobiDBLite consensus disorder prediction 189 228 - -
Pste9g00707 352 SUPERFAMILY NAC domain 9 168 IPR036093 GO:0003677|GO:0006355
Pste9g00707 352 FunFam NAC domain-containing protein 100-like 27 172 - -
Pste9g00707 352 Gene3D NAC domain 27 173 IPR036093 GO:0003677|GO:0006355
Pste9g00707 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00707 Pste-Chr9 3621942 3624134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00707 16 352 NAC Transcription Factor Family AT5G07680 50.147 2.37e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste9g00707 NAM 3.9e-39 No_clan