Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00686 AAAAAATGATTAAAATTGGTAGGTGTTAAATGAAAAATAGGTAGGTGTGAAATAAAATTTTTTTTTGTGTCCACTGTTTAAAGTCCAAAACCCTCTTCCTCTTCCTCTTGCTTCTGGTTAGGGTTTAGGGTTCCTCCTTCGAATCAAAGCATGGCTGCTACAGCAACTGCTAGATCTTTTCTCCAAGTAGCCGCAACGGAGGAGGTTGCACCGCCTCTTAGAGTCGTTCAGATTGAAGGATTGGTTTTCTTGAAGATAATTAAGCATTGTAAGGACCACTCGCCTTCTTTAGTCACTGGACAACTTCTTGGGTTGGATGTGGAAGTGTTCTTGAAGTTACCAATTGCTTCCCCTTTCCAGGAGGAGGATGAGGAAATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGGTGCCTGCGGGAGGTTAACGTTGACAATAACACTATTGGATGGTACCAGTCTACATTGCTTGGCTCCTTTCAGACTGTGGAGCTTATTGAAACCTTTATGAATTATCAGGAGAATATTAGGCGCTGTGTTTGCATAATATATGACCCATCGAGGTCTGATCAAGGTGTTCTAGCTCTTAAGGCCTTGAAACTTTCTGACTCATTCATGGAACTCTATCGCAGCAATAATTTTATCGGAGAGAAATTGAGGGAGAAGAACTTAACATGGGTGGATATCTTTGAGGAAATACCGATCAAGGTTTCAAATTCTGCCCTTATCAGTGCTTTTATGACAGAGCTGGAACCTGATACTCCAGTCTCCCAATGTGATTATGATCGTTTGCAATTGTCAACCAGTTCATTAATGGAGAGGAATATGGATTTTTTTATTGAATGCATGGATGACTTGTCCCTAGAACAACAAAAGTTCCAATTCTACTATCGGAGCTTGTCTCGTCAACAAGCTCAGCAGCAAGCTTGGCTTCACAAGAGAAGGGTGGAGAACATGTCTCGTAAAGCTGCGGGAGAAGAACCCTTGCCGGAGGAAGATCCTTCAAATCCCATTTTCAAGTCACTGCCTGAGCCATCACGGTTGGAGAGCTTCCTCATAACAAATCAAATTTCCAACTACTGCCACCAAATCAATGGGGTGGCAGGGCAGGGCTTGAACAGACTCCATTTGATGAAGGCTTTGCGTAAAGCTTCTGGAGAAGAACCCTTGCCGGAGGAAGATCCTTCAAATCCCATTTTCAAGCCACTGCCTGAGCCATCACGGTTGGAGAGCTTCCTCATAACAAATCAAATTTCCGACTACTGCTACCAAATCAACGGGGTGTCAGGGCAGGGCTTGATCAGACTCTATTTGATGAAGGCTTTGCGTGAGGATTGATAAGGCAACTTTTGTTTGCCATTCTGATATTTTGATCCAATTTCTTCTCCATACAGGCTGAGAATATTATGGTGAATTTGGTAGTAGATTATTGGATATCATGCTTTTAAGGTGGCATAATTTTTTTTAGTTTGTGAACACATCCAATTGTATGCAGTATAATCTGTTACTTAGAGATTCATGCTGTGCCTCTTGCTGCTTTTATTTGAGTTACAAATTTGGCATCCAGTTATATTATTAGTATTATTCACCAACTACCTTAGTTCATTTTTGTGGGAAATATTTACTTTTCATGAAGACATTTGTAAGATATGAAATTTGATGGTGTAAAAGTAGTTAGAAAAACAAATCTCGTATATTGTAATGAAAAGTAGTCTCTTTAAATTTCCCTAGAATTGGATAAGAACCTCCAAATTTGGAGCTGAGGAATGGCTGTAAG 1783 0.4044 MAATATARSFLQVAATEEVAPPLRVVQIEGLVFLKIIKHCKDHSPSLVTGQLLGLDVEVFLKLPIASPFQEEDEEIEADGANYQLEMMRCLREVNVDNNTIGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYRSNNFIGEKLREKNLTWVDIFEEIPIKVSNSALISAFMTELEPDTPVSQCDYDRLQLSTSSLMERNMDFFIECMDDLSLEQQKFQFYYRSLSRQQAQQQAWLHKRRVENMSRKAAGEEPLPEEDPSNPIFKSLPEPSRLESFLITNQISNYCHQINGVAGQGLNRLHLMKALRKASGEEPLPEEDPSNPIFKPLPEPSRLESFLITNQISDYCYQINGVSGQGLIRLYLMKALRED 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00686 397 CDD MPN_eIF3h 24 285 IPR027524 GO:0003743|GO:0005737|GO:0005852
Pste9g00686 397 Pfam C-terminal region of eIF3h 332 396 IPR045810 -
Pste9g00686 397 Pfam C-terminal region of eIF3h 143 335 IPR045810 -
Pste9g00686 397 ProSiteProfiles MPN domain profile. 26 157 IPR037518 -
Pste9g00686 397 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 20 320 - -
Pste9g00686 397 FunFam Eukaryotic translation initiation factor 3 subunit H 5 212 - -
Pste9g00686 397 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 24 125 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pste9g00686 397 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 21 336 IPR027524 GO:0003743|GO:0005737|GO:0005852
Pste9g00686 397 SMART pad1_6 25 156 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pste9g00686 397 Gene3D Cytidine Deaminase, domain 2 2 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00686 Pste-Chr9 3498978 3505616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00686 334 397 Eukaryotic Initiation Factors Gene Family AT1G10840 75.000 7.92e-28 108