Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00665 ATGGACGCACCCCGTTTCAAATTGCACGGTGTCCGGAATATCTACGGTGCCGACAAAGACACCTTTCAATTTTTCGACATGGAGATTATAACACCAACACCAACCACCGCAGCGAAATCGCCGGAACCCGACATAGAGACTCCGACCCGGATCCACCAATCTGTCGGAAACCCGAATCCGAATCCAAAGCCGGTGTCTTTTTCCAATGGGGTCTTGAAGCGCCACCATGCAAACCACCGCCTCACGGTGGTTTACAAAGAATGTCTGAAGAACCACGTGGCGAGTTTAGGTGGTCATGCTTTAGATGGCTGTGGCGAGTTCATGCCGTCGCCGGCCGCCACCCCCGACGACCCCAGCTCCATCAAATGCGCCGCATGCGGCTGCCACCGGAACTTCCACCGCCGTGAGCCAGAGGAGCCGCCCATTTCTCCGGCAACGCACCATGTGTTGGAATACCAGCCCCACCACCGCCACCACCCTCCGCCCCCGGCGCCTCCGCACCGGAGTCCCAACTCCGCCTCCCCTCCTCCGATCTCGTCGTACCCCTCCGCCCCGCATATTCTCCTCGCCCTCTCCGGCGGCGGCCTGTCCGTGGCGCCGGAAAACACCGCCGCGCCGGCGCCGGCGCACCACTCGCGGAAACGCTTCAGAACGAAGTTCACCCAGGAGCAGAAAGAGAAGATGCACGAGTTCGCTGAGAAAGTGGGGTGGAAGATGCAGAAGCGCGATGAAGACATGGTTATGGAGTTCTGCAACGAGGTTGGTGTCGATAGAGGAGTTCTCAAAGTTTGGATGCACAACAACAAAAACACTTTCGGTAAAAAAGACAACAACGTTGTCGTTAACGTTAACGGCAGCGCCAACATCACCTCCAACGGCGCTGCTCTTATCGGCGCCACACATGAGCGAGGCGAAATTAACGGTAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCGACAACAGCCGCAACCACAACCTCGGTTCCCAGGATGTGAACGAGTACGAGAATGATAGTGGAACTAACGGCGGTGGTACTAATGGGTCTTCTTCTTCTTCTTGA 1065 0.5737 MDAPRFKLHGVRNIYGADKDTFQFFDMEIITPTPTTAAKSPEPDIETPTRIHQSVGNPNPNPKPVSFSNGVLKRHHANHRLTVVYKECLKNHVASLGGHALDGCGEFMPSPAATPDDPSSIKCAACGCHRNFHRREPEEPPISPATHHVLEYQPHHRHHPPPPAPPHRSPNSASPPPISSYPSAPHILLALSGGGLSVAPENTAAPAPAHHSRKRFRTKFTQEQKEKMHEFAEKVGWKMQKRDEDMVMEFCNEVGVDRGVLKVWMHNNKNTFGKKDNNVVVNVNGSANITSNGAALIGATHERGEINGNGNGNGNGNGNGDNSRNHNLGSQDVNEYENDSGTNGGGTNGSSSSS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00665 354 MobiDBLite consensus disorder prediction 153 181 - -
Pste9g00665 354 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 136 IPR006456 -
Pste9g00665 354 SUPERFAMILY Homeodomain-like 203 274 IPR009057 -
Pste9g00665 354 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 61 271 - -
Pste9g00665 354 MobiDBLite consensus disorder prediction 164 181 - -
Pste9g00665 354 Gene3D - 199 273 - -
Pste9g00665 354 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 85 136 IPR006456 -
Pste9g00665 354 MobiDBLite consensus disorder prediction 305 354 - -
Pste9g00665 354 Pfam ZF-HD protein dimerisation region 83 137 IPR006456 -
Pste9g00665 354 NCBIfam homeobox domain, ZF-HD class 213 270 IPR006455 -
Pste9g00665 354 MobiDBLite consensus disorder prediction 306 354 - -
Pste9g00665 354 FunFam Zinc-finger homeodomain protein 2 201 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00665 Pste-Chr9 3397130 3399611 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00665 27 269 ZF-HD Transcription Factor Family AT5G15210 52.778 2.22e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pste9g00665 ZF-HD_dimer 4.5e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g00665 9 3397130 3399611 Pste5g00877 5 5630344 5631201 PCT