Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00660 ACAGAATCCCCTCTTTTGATCTCGGTTTCAATATTCATCATCAAATCACTCACTGGTCCTCCCTTTATAGAAATCTTAGATCTGCTTTTAACACAAGGTGGTGTTTGGTGTGAAAACCTTCATCTATCTATCTATCTCCAAAGAGGGTGTGTATAAAAACAAGAGTTAGAAGAAGAATCAAGAATTGTAGAGAGAGAGAGAGTTAAGGTGGATCCAACAAGGCAAGGGAAGAGGTCTCTCCCTTATGAGGAGAAAAAAGAACAAGCTTTTTTCAACTTTCCTATTCATCAAACACCATCTCATCAAAATCCAAAGGAACAAGCTTCACCATCACTACTACCATTTTCACTCCTTATGAGTTCCAAAGAAAAAAACACCTTCTTCCCCACCCCACATGGCCAAATAACCACTTCTCAATTCACTAATAGCAAGGATCCATCTCAAGCTACACATCAAGCCAATCTATTATTACCAGGCCATGATGATATTAGGAGAAAGCACTATAGAGGAGTTAGGCAGAGACCTTGGGGCAAATGGGCAGCAGAAATAAGAGACCCTAAGAAAGCAGCAAGAGTATGGCTTGGAACCTTTGACACAGCAGAAGCTGCAGCTATGGCTTATGATGCTGCAGCATTGAAGTTCAAAGGAAACAAAGCCAAACTCAATTTTCCTGAACGTGTTGCTATTCCAATGCCACAAACCAACAATACTACTTCCTCAGTGATGAACACAACACAATTATCTTCTTCTCTTCCACCACCACATAACAAGAACAACAACATTGGTCATGATCATCATCATCAAAGTCTTCAAATTAGTACCAATACTGATGATAATAACTCTCTTGCATCAAAAGGGTTTCCAAATCTTGAGGAGTATGCTAGGTTGCTGAATTGCAGCGATGATGATGACTTTCAACGTGTTGCATTGGAGCTTTACCAGCATCAACATCATCATAATGAGGATTTTATTTATGGCTCATCATCAAGACCACCACCTGTGCCATTTTTTCTCTCTTCTTCTTCTGCAGCAATGCAATCTTCAACTTCTGAGGGTTATGATTTTCCTTCATGTTTTGGTCATGGAGGGAGTGGTTTTGATGAAGGGAACACGAGGGGTTCATAGGTTTTTGCCACAATAAAAGTTGTTCAAATCAT 1157 0.3984 MSSKEKNTFFPTPHGQITTSQFTNSKDPSQATHQANLLLPGHDDIRRKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAMAYDAAALKFKGNKAKLNFPERVAIPMPQTNNTTSSVMNTTQLSSSLPPPHNKNNNIGHDHHHQSLQISTNTDDNNSLASKGFPNLEEYARLLNCSDDDDFQRVALELYQHQHHHNEDFIYGSSSRPPPVPFFLSSSSAAMQSSTSEGYDFPSCFGHGGSGFDEGNTRGS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00660 256 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Pste9g00660 256 CDD AP2 48 107 IPR001471 GO:0003700|GO:0006355
Pste9g00660 256 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Pste9g00660 256 MobiDBLite consensus disorder prediction 112 139 - -
Pste9g00660 256 MobiDBLite consensus disorder prediction 112 159 - -
Pste9g00660 256 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Pste9g00660 256 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Pste9g00660 256 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Pste9g00660 256 Gene3D AP2/ERF domain 48 108 IPR036955 GO:0003700|GO:0006355
Pste9g00660 256 MobiDBLite consensus disorder prediction 1 30 - -
Pste9g00660 256 PANTHER DNA-BINDING DOMAIN 30 162 IPR044808 GO:0003700|GO:0009873
Pste9g00660 256 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Pste9g00660 256 FunFam Ethylene-responsive transcription factor 2 48 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00660 Pste-Chr9 3351930 3354287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00660 24 139 AP2-EREBP Transcription Factor Family AT5G61890 60.504 1.62e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste9g00660 AP2 3.2e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g00660 9 3351930 3354287 Pste5g00451 5 2948709 2961214 PCT