Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00640 ATGCTTCAGTGGACGGAACCTCAATCGGAAGCGCAAAACGCCGTCGTTATGGGCGACGGCTCTTTATTACCGTCGTTCAGGCCAATGCTGGACGGTGACTGGTACAGTGACCAGTCTCACTACGAGCTTCTTCAAAACGGTGCGTTTTTGCCTCAGCAACAGCAAACCGGTTTGGAGAGTGGATACCACTGTGGTTTGGGTTCACAGAGCGGTTTCCTCGCGCAGGTTGAGCTGAGTTCGAACCCTGAGTTTGCGGCGAGTCAACTCGGGGTGGCGCTGCGGTGGCCTCTTGAGGCGATTGCTCCGTCGGCGCTGTATTGCAGGCGGGCGGAACGGTGGCGAGAGGTTGGGAAGGCGGCGGAATTGGTTCCGCCGCCGGTGGTGGAGGAGGAGGGAGGGAAGATGGAGGAGAATGGTTTAGATGGAAACGATGGTGATGGGAATGGCGGCGTAGAAAAGAGGAAGAAGAAGGGAATGCCGGCGAAGAATCTCATGGCTGAGAGGAGGAGGAGGAAGAAGCTCAATGATAGGTTGTACATGCTTAGGTCGGTTGTGCCTAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCCATTGAATACTTGAGGGAGTTACTAATGCGGATTACTTATCTTCATCATGAACTAGAGTTAAGCCCACCTGGCTCATCCCTTCAACATTCTGCAAGCTTTTGCCCTGTGACACCCACCCTTCCCTGCCGGGTGAAGGAAGAACTATGTCCTACCTCTCTGCCAAGTCCTAAAAATCAATCACCAAAGGTGGAGGTTAGCCTAAGGGAAGGGAGAGCTGTCAATATCCATATGTTTTGTGCCAGCAGACCAGGCCTTTTACTCTCTACCATGAAGGCATTGGATAACCTTGGATTGGATGTTCAGCAGGCTGTCATCAGTTGTTTCAATGGTTTTGCTTTAGATGTGTTCAGAGCTGAGTCTTTCACATGTCAGCAATGCCAAGAAGGCCTGGATGTCCTTCCAGAGCAAATTAAAGCGGTACTGTTGGACACAGCAGGTTTCCATGGTACGATTAAAGCTTTGTCCAGGCTAAAGATCAAGGGGTTATCAATATCTGCATTGGGAGGAGTTAGCTCCTTCATCTTTCTGAATTTCAGCAAACTTATGTTGTTAATTGTCATCATTAGTCATGGCAAATTTTCCATTCCTAATATAGTTCTTTCATAA 1206 0.4934 MLQWTEPQSEAQNAVVMGDGSLLPSFRPMLDGDWYSDQSHYELLQNGAFLPQQQQTGLESGYHCGLGSQSGFLAQVELSSNPEFAASQLGVALRWPLEAIAPSALYCRRAERWREVGKAAELVPPPVVEEEGGKMEENGLDGNDGDGNGGVEKRKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLRELLMRITYLHHELELSPPGSSLQHSASFCPVTPTLPCRVKEELCPTSLPSPKNQSPKVEVSLREGRAVNIHMFCASRPGLLLSTMKALDNLGLDVQQAVISCFNGFALDVFRAESFTCQQCQEGLDVLPEQIKAVLLDTAGFHGTIKALSRLKIKGLSISALGGVSSFIFLNFSKLMLLIVIISHGKFSIPNIVLS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00640 401 CDD bHLH_AtAMS_like 161 232 - -
Pste9g00640 401 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Pste9g00640 401 Pfam Helix-loop-helix DNA-binding domain 165 207 IPR011598 GO:0046983
Pste9g00640 401 Gene3D - 149 221 IPR036638 GO:0046983
Pste9g00640 401 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 224 IPR036638 GO:0046983
Pste9g00640 401 SMART finulus 164 210 IPR011598 GO:0046983
Pste9g00640 401 FunFam BHLH transcription factor 154 222 - -
Pste9g00640 401 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 82 347 - -
Pste9g00640 401 MobiDBLite consensus disorder prediction 130 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00640 Pste-Chr9 3243290 3248982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00640 159 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 82.927 1.92e-88 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste9g00640 HLH 2.6e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00875 5 5609039 5612801 Pste9g00640 9 3243290 3248982 PCT