Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00626 TGGGAACACACACACAAGAAGAAACCTAAACTCTCTCTCTCATCTCTTACTCTTTCTCTTCAATTTTAATTAAAAACCAAGCCTTGGCCACTGCTTTCCCAATGCAATTGTTTTCTACACATCCAACATCACTGTCTATCTATGTTATTGTACTCTCTCTCTTTTCTCTTTCTTTATTTCCTTTCTCCATCTCTCACTCTACCTTTGTGTGTGGTCCTATAATTTTTCCTTCTCTTTATATCCCTCTTATCACTTTCTCCATTTCTGCATACCTAGCCTTCTATCCCAACACCTCTATAATCATAGCCTCTCTCCCCCCTCCTTCTCCATATTATATACCTTCTCTTTATGTTTTCTTACCAAACCAAACCTCATTTTCATTCTTTTCTTGTTTTCTTTACTCTCTAGCTAGCTCCCACTCTTCACTTTCATCTTCTTTAATTTCTTCCTTGTTTGCATAGTAATTAAACTCAACTACTAGCTGAAGCTATAGCAGCTGCAGGTGGCTGGTGATTATACTATAGACAAATCTATATATATTACACAAATTAATTAAGCTCTATCTAGCTAGAAAAAATGTCTAGCAGAAGGTCAAGGCAGCAATCTGCATCAACAAGGATCTCAGATGACCAAATCATCGACCTTGTTTCAAAGTTGCGTCAACTTGTTCCTGAGATTCGTGATAGGCGCTCTGACAAGGTTTCAGCATCTAAGGTCCTACAAGAGACCTGTAACTACATCAGAAGCTTACAGAGAGAAGTGGATGATTTAAGTGAACGACTGTCTCAGTTGTTGGCCACAATTGATGCTGATAGCCCTGAAGCTGCTATCATTAGGAGCCTAATTAACTAATTATTAAGCAAGTAATAATCTAATTTTCCTATATTCAAGGAGATATTTAAGAGTGTATTTCGATCTTCTTCTTAGGTCGCATAGAGTGCAGTTTGAGGTGCCTCCTTCCAATATAGTATATGGAAGGAATGGAGCACTTGTAAGTTAAAGGTTTTGTAATAATAATTAATTAAGGAGTTTGTATTATGGCTATATATTAATATATGCATGCCACGTTTATAGATGGCCAAAATGTATTAATTGTTAAATTTATTTTAGTATTTTTTTTTTTTTATATATAAGAACTTCGGTTTTAGTGGAATC 1155 0.3558 MSSRRSRQQSASTRISDDQIIDLVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRSLQREVDDLSERLSQLLATIDADSPEAAIIRSLIN 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00626 91 Pfam Helix-loop-helix DNA-binding domain 19 59 IPR011598 GO:0046983
Pste9g00626 91 Coils Coil 48 75 - -
Pste9g00626 91 FunFam Transcription factor ILI6 5 87 - -
Pste9g00626 91 Gene3D - 2 83 IPR036638 GO:0046983
Pste9g00626 91 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Pste9g00626 91 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 78 IPR036638 GO:0046983
Pste9g00626 91 CDD bHLH_AtPRE_like 9 75 - -
Pste9g00626 91 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00626 Pste-Chr9 3141335 3144105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00626 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 76.250 1.76e-37 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste9g00626 HLH 6.3e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g00626 9 3141335 3144105 Pste5g00894 5 5783069 5784538 PCT