Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00614 TCTCAACCTAAAAATCGCTGTCTTTCGGTCTGCATACCTATCATCATCACCATCCCTCTTTCTGAAAACTCTGTCACCATGAGAGTGAGAGCCAAACTCCTGTTATCGCCACCACCCTCTTAATTATATCTCTCTACCACCAACACACACCCAAAGAGAAGAGAAGAGAAGAGAAAACTAACTATACTATTGTGTGTGATTCTCAAGATCACACCCTCCTGCATGAATGAATCATAATATATTATCACTTCCACAACACAACACCACCACCACCCTCACCCTCTTCTTTCTCTCCCTCCATGGCTTTCCCTCCTTCTCACACTTTCATGTTCCAAACCCACCAAGACCATCATGACCCCCACCAGCTCCATCTTCGCTCTACTAATTCAACCTCTCTCAACGCCTTCCCCTCTTTCACTCCCCATCACTTTCAAGGGGGTGGTGCAGGTGCGGGTGCAGGTTTTATGATGAAGCGTTCGATGTCGTTTTCAGGCATAGAGAACAAGTGCGATGAAGTGCATGGAGACGACGAGTTATCAGATGATGGATCTCAGCTTGGTGAGAAGAAGAAGAGGCTGAGTTTGGAGCAGGTGAAGGCACTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAACCTGAGAGGAAAATGCAGCTTGCAAAGGCTTTGGGGCTTCAGCCAAGGCAGATAGCTATTTGGTTCCAGAATAGAAGAGCAAGGTGGAAGACTAAGCAGCTTGAGAAGGAGTATGAAGTGCTAAAGAAGCAGTTTGAAGCTGTCAAAGCTGATAATGACTCACTCAAGGCTCAGAATCAGAAACTACATGCAGAGTTACAAACTCTAAAAAGTAGGGACTGCTGTGAAACCGGGACAGTTAGTCTCAAGAAGGAAACTGAGGGTTCATGGAGCAATGGAAGCAACAACAGTTCAGATATCAATTTGGATCTCTCAAGAACACCAGTGATGAACAGTCCAGTATCTTCTCAGAAAGGAAAAAACCTTCTACCCTCTTCCCTTAAGCCCACAAGCATAACTCAACTCCTCCAATGCTCATCAAGATCAGATCTCCAAGATGAGAGCTTCTGCAATATGTTTCACAACATTGATGAGCAGCAGAATTTTTGGCCATGGCCTGATCAGCAGCACCATTTTCATTAATCAATCAAAACCCAAATTTGGTTTTGGATATTATAAACGATTTGAGGTTGAAAAAAGTTATGAGAAGTAATTAAGTTTATTGATTAGGCTTAGCTCAACCTTCTTCTTTTTCCTACCAGTTTTTCCAATTTATGTTTATGATGTAGATTGGTGTATAAAAAGTTTGAACACATTTACTTAAGTCATAATCATCAGGGGGTGGTGGACTTTGAGTAGTA 1375 0.4276 MAFPPSHTFMFQTHQDHHDPHQLHLRSTNSTSLNAFPSFTPHHFQGGGAGAGAGFMMKRSMSFSGIENKCDEVHGDDELSDDGSQLGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDSLKAQNQKLHAELQTLKSRDCCETGTVSLKKETEGSWSNGSNNSSDINLDLSRTPVMNSPVSSQKGKNLLPSSLKPTSITQLLQCSSRSDLQDESFCNMFHNIDEQQNFWPWPDQQHHFH 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00614 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 59 277 IPR045224 GO:0003700
Pste9g00614 285 FunFam Homeobox-leucine zipper protein ATHB-13 81 148 - -
Pste9g00614 285 SUPERFAMILY Homeodomain-like 80 146 IPR009057 -
Pste9g00614 285 Gene3D - 81 160 - -
Pste9g00614 285 SMART HOX_1 87 148 IPR001356 GO:0003677
Pste9g00614 285 Coils Coil 136 184 - -
Pste9g00614 285 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Pste9g00614 285 PRINTS Lambda-repressor HTH signature 124 140 IPR000047 GO:0003677
Pste9g00614 285 PRINTS Lambda-repressor HTH signature 115 124 IPR000047 GO:0003677
Pste9g00614 285 CDD homeodomain 89 145 IPR001356 GO:0003677
Pste9g00614 285 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Pste9g00614 285 Pfam Homeobox associated leucine zipper 144 184 IPR003106 GO:0006355|GO:0043565
Pste9g00614 285 Pfam Homeodomain 89 142 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00614 Pste-Chr9 3062844 3065879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00614 1 279 Homeobox Transcription Factor Family AT3G01220 51.579 6.22e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste9g00614 Homeodomain 1.2e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g00614 9 3062844 3065879 Pste5g00901 5 5863505 5865248 PCT