Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00573 CTATAAACCAAATACTTGGTTTCAATTGGTATTGGCTTGGGAAGGTCTTGTTGATTTTGAGCTTTATGTAATAAATCCCAAGACCTTTTCCAATAAGCTTGCCAAGCATAAAATTTTAAAAAAAAACAAAAACAAAAACCAAGGCTTAGTGCAAGAAAAAATAAAGCACAAGTCATGGGAATAATGGTTGGAAGTGTGATTAAGGTTGTCTTTACCCTTTTGGCCTCTTTCGCCATGATCATCCCATGCCTTGAAGCTGGCATTGCTGAGTTCGATGATTTTCTCAGAAAACAAGCTCACGAAGCTCATGAAATTGCTCTTGAGGCCTATGTCCCATCGCCCGAAGAAATCACCAATGAACTTAATTTGCATGTTCATTTGGCATTTGAAAACTCCACAAGGAGAGAACTAAGACAAAGGAGAGGTCAAGGATGTGATGCTACCAATCCTATTGACACATGTTGGAGGTGTAGAAGTGACTGGGCTCAAGACAGGTTTAGGCTAGCTAAATGTAGCAAAGGATTCGGAAGAAGAGCCGTTGGAGGGCTTGGTGGGCCCATTTATGTTGTCACTGATAGTTCCGATAATGACATGGTGAACCCTAAACCAGGAACTATCCGACATGCTGTCACCCAACAAGGCCCATTATGGATCACCTTCGCACATAGCATGATTATCACATTGCAACAAGAATTGTTGATTTCCTCAAACAAGACCATAGATGGTCGTGGTGCCAATGTTCAATTTAAGGGTGGTGCTGGCCTTACCATTCAGTTTGTTAGCAATGTTATCATCCATGGAATTCGCATCAAGAACATTGTTCCTAAGGAAGGTGGCATGATTAAAGACTCTTACAACCATGTTGGACTAAGAACAAGGAGTGATGGTGATGCCATCTCTATTTTTGGAGCCTCTAACATTTGGATTGATCATGTTTCCCTTTCTAATTGTGCTGATGGTCTTATTGATATCATCGAAGGTTCCACTGGCATCACCATCTCAAATTGCCACATGACTAAACATAATGATGTGATGCTTTTTGGGGCTAGTGACTCATACAGTGGAGACAAGATCATGCAGATAACAGTGGCATTCAACCATTTTGGGCAGGGATTGATTCAAAGGATGCCAAGATGTAGATGGGGTTTTGTGCATGTCCTCAATAATGACTACACTCATTGGATGATGTATGCAATTGGTGGTAGCTCAGGGCCAACCATTTTGAGTCAGGGAAATCGTTTCATTGCTCCCAACAATGATGTTGCCAAGGAAATCACACATAGGGACTATGCAACACCTGATGTATGGAAAAATTGGCAGTGGCAATCAGACATGGACTTATTCATGAATGGAGCAAAGTTCACTACTTCTGGGTCACCTATTCGTTTGGCATACAATAAAGGTTTCATCATGAAGCCAAGAGATGGGACACATGTTAGTAGGCTAACACGACATTCTGGTGCCCTTGATTGCTTTGTGGGCAGACCTTGTTAGAGAATATATATTTATTTTCTTTGTTATTTTATTATCGTTAAAACTAATACAGAAAATGTATGATAATCCTCTAGCTAGGATGAATTGAGTGTTGAGGATGAGTAGACAACAAGTCTTATGCAGCAAGCATTTATGGCCTTGTAAAAGTAAAAGGGAATTTGTTGCTTGGGTTCAAATAAGAAGA 1678 0.4041 MGIMVGSVIKVVFTLLASFAMIIPCLEAGIAEFDDFLRKQAHEAHEIALEAYVPSPEEITNELNLHVHLAFENSTRRELRQRRGQGCDATNPIDTCWRCRSDWAQDRFRLAKCSKGFGRRAVGGLGGPIYVVTDSSDNDMVNPKPGTIRHAVTQQGPLWITFAHSMIITLQQELLISSNKTIDGRGANVQFKGGAGLTIQFVSNVIIHGIRIKNIVPKEGGMIKDSYNHVGLRTRSDGDAISIFGASNIWIDHVSLSNCADGLIDIIEGSTGITISNCHMTKHNDVMLFGASDSYSGDKIMQITVAFNHFGQGLIQRMPRCRWGFVHVLNNDYTHWMMYAIGGSSGPTILSQGNRFIAPNNDVAKEITHRDYATPDVWKNWQWQSDMDLFMNGAKFTTSGSPIRLAYNKGFIMKPRDGTHVSRLTRHSGALDCFVGRPC 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00573 439 PANTHER PECTATE LYASE 18-RELATED 44 437 IPR045032 GO:0030570
Pste9g00573 439 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Pste9g00573 439 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Pste9g00573 439 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Pste9g00573 439 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Pste9g00573 439 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Pste9g00573 439 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Pste9g00573 439 PRINTS Pollen allergen Amb family signature 410 433 IPR018082 -
Pste9g00573 439 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Pste9g00573 439 SMART amb_all 165 362 IPR002022 -
Pste9g00573 439 Gene3D - 90 432 IPR012334 -
Pste9g00573 439 Pfam Pectate lyase, N terminus 30 79 IPR007524 GO:0030570
Pste9g00573 439 SUPERFAMILY Pectin lyase-like 91 406 IPR011050 -
Pste9g00573 439 Pfam Pectate lyase 173 356 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00573 Pste-Chr9 2877369 2880168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00573 12 439 Polysaccharide Lyase AT1G14420 56.027 0.0 513