Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00567 CTCTCAATCTTCTCGCTTCGCGTGAGCCATGACGGATGGTGGCCATCTCTTCAACAACATCACTCTCGGAGGCCGTGGAGGCACTAATCCAGGGCAGATAAAAATATATTCTGGAGGAATTATATGGAAAAGGCAGGGTGGAGGTAAATTAATTGAAGTTGATAAATCTGACATAATGGGGGTTACATGGATGAAGGTTCCAAGGACTAACCAACTTGGTGTTCAAATCAAAGATGGGTTGTACTACAAGTTCACGGGATTTCGTGACCAGGATGTTGCAAGTTTGACCAATTTTTTCCAGAACACATGTGGAATATCAGTAGAAGAGAAGCAGCTTTCTGTTAGTGGTCGTAATTGGGGAGAAGTTGATCTAAATGGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAAGTGTCTTTAGCTGATGTCTCTCAAACTCAGCTTCAAGGGAAGAATGATGTGATCTTGGAGTTTCATGTGGATGACACGACTGGAGCTAATGAGAAAGATTCACTGATGGAGATAAGTTTCCATATACCAAATTCCAACACTCAGTTTGTGGGTGATGAAAATCGTCCTCCTGCTCAGGTTTTCCGTGACAAAATAATGTCAATGGCTGATGTTGGTGCAGGAGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGCGATCCTTACACCTAGGGGACGATACAGTGTTGAGTTACACTTGTCATTCTTGCGGCTTCAAGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAACCACATACCTTCGTCATTATTAGTCTTGATCCCCCTATTCGAAAGGGACAAACTTTGTACCCTCATATTGTTATGCAGTTTGAAACTGACTATGTTGTTCAAAGTGATTTGGCAATACATGAAGATCTTTATAACTCAAAGTACAAGGACAAGTTGGAGCTTTCTTATAAGGGGCTTATTCATGAAGTCTTCACCACAATATTACGTGGCTTGTCTAGTGCCAAAGTGACTAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTTTGTATCCCCTTGAGAAGAGCTTCTTCTTTTTACCTAAACCTCCCACTCTTATCCTTCATGAAGAGATTGACTATGTGGAATTTGAGAGGCATGCTGCTGGTGGTTCCAATATGCATTATTTTGACCTTCTTATCAGACTAAAATCTGAACAAGAGCATCTCTTCCGTAATATTCAGAGAAATGAGTACCACAATTTGTATGAATTTATCAGTTCAAAGGGCTTGAAAATTATGAACTTAGGAGATGCCCAACCTACTGTTGGTATAAAGAAGGTTCTTGAGAATGATGATGATGATGCTGTTGATCCTCATCTTGAGCGCATAAAAAATGAAGCTGGTGGAGATGAAAGTGACGAGGAGGATTCTGATTTTGTTGCTGACAAGGATGATGAAGTGATAGTGAAGCCTGCCAAAAAGGAATCAAAGAAGGATCTGCCTTCTAAGCCATCTTCTTCTAAGAAGAAATCAAAAGATGATGAAGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGACCCAAATGCACCCAAGAGAGCAATGTCCGGTTTCATGTTCTTTTCTAAATTAGAAAGAGAGAATCTAAAAAAAACTAATCCTGGAATTTCATTTACGGATGTGGGAAGAGTTCTTGGAGAGAAATGGAAAAAGATGTCAGTGCATAAGGAGGTTTCAATAGATATTGCTAAAAATTGCTGTCCGTTTCTTTTTTTGATAAGCAATTCTTGTCAGTCTCTACCTGGATGTAGTTTTGTAGCTACTGATTGTCATGACACGCAAGTTAATGTAGGCATCCTCCATGTATTTCTTACTAATGATGGCATCTACTCATGCTCTGTAATTGACGCAAGTTTATGCTCTTTGAAATAG 1981 0.3942 MTDGGHLFNNITLGGRGGTNPGQIKIYSGGIIWKRQGGGKLIEVDKSDIMGVTWMKVPRTNQLGVQIKDGLYYKFTGFRDQDVASLTNFFQNTCGISVEEKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVQSDLAIHEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSSAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYEFISSKGLKIMNLGDAQPTVGIKKVLENDDDDAVDPHLERIKNEAGGDESDEEDSDFVADKDDEVIVKPAKKESKKDLPSKPSSSKKKSKDDEDGKKKKQKKKKDPNAPKRAMSGFMFFSKLERENLKKTNPGISFTDVGRVLGEKWKKMSVHKEVSIDIAKNCCPFLFLISNSCQSLPGCSFVATDCHDTQVNVGILHVFLTNDGIYSCSVIDASLCSLK 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00567 650 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 538 580 IPR009071 -
Pste9g00567 650 SUPERFAMILY PH domain-like 207 441 - -
Pste9g00567 650 CDD PH2_SSRP1-like 343 442 - -
Pste9g00567 650 Gene3D High mobility group box domain 521 590 IPR036910 -
Pste9g00567 650 FunFam FACT complex subunit SSRP1 97 180 - -
Pste9g00567 650 Pfam Structure-specific recognition protein (SSRP1) 107 175 IPR024954 -
Pste9g00567 650 Gene3D - 5 93 IPR011993 -
Pste9g00567 650 PRINTS Structure-specific recognition protein signature 417 435 IPR000969 GO:0003677|GO:0005634
Pste9g00567 650 PRINTS Structure-specific recognition protein signature 357 375 IPR000969 GO:0003677|GO:0005634
Pste9g00567 650 PRINTS Structure-specific recognition protein signature 330 343 IPR000969 GO:0003677|GO:0005634
Pste9g00567 650 PRINTS Structure-specific recognition protein signature 375 392 IPR000969 GO:0003677|GO:0005634
Pste9g00567 650 PRINTS Structure-specific recognition protein signature 242 258 IPR000969 GO:0003677|GO:0005634
Pste9g00567 650 PRINTS Structure-specific recognition protein signature 265 281 IPR000969 GO:0003677|GO:0005634
Pste9g00567 650 PRINTS Structure-specific recognition protein signature 401 417 IPR000969 GO:0003677|GO:0005634
Pste9g00567 650 PRINTS Structure-specific recognition protein signature 220 236 IPR000969 GO:0003677|GO:0005634
Pste9g00567 650 SMART hmgende2 537 592 IPR009071 -
Pste9g00567 650 Gene3D - 200 339 - -
Pste9g00567 650 MobiDBLite consensus disorder prediction 469 540 - -
Pste9g00567 650 Gene3D - 340 448 IPR011993 -
Pste9g00567 650 SUPERFAMILY HMG-box 525 581 IPR036910 -
Pste9g00567 650 FunFam FACT complex subunit SSRP1 1 94 - -
Pste9g00567 650 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 580 - -
Pste9g00567 650 Pfam Histone chaperone Rttp106-like 351 440 IPR013719 -
Pste9g00567 650 Pfam HMG (high mobility group) box 538 581 IPR009071 -
Pste9g00567 650 CDD PH1_SSRP1-like 208 341 - -
Pste9g00567 650 SMART Rtt106_2 349 442 IPR013719 -
Pste9g00567 650 Pfam POB3-like N-terminal PH domain 8 100 IPR035417 -
Pste9g00567 650 FunFam Fact complex subunit ssrp1 200 339 - -
Pste9g00567 650 Gene3D - 96 180 IPR038167 -
Pste9g00567 650 MobiDBLite consensus disorder prediction 490 529 - -
Pste9g00567 650 FunFam FACT complex subunit SSRP1 340 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00567 Pste-Chr9 2867993 2874905 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pste9g00567 POB3_N 1.4e-22 CL0266