LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste9g00515	ACATGTGTGTTGAAGTTCAATACAAACCAATATGTGGCATTTAGTGAGTGTGGCCAAGTGAGTGAAGACATAAACACGTGGTACGAGGATTGGTTCCCGAACACCTTGTGCTGTCGAAATGCTCTCACGGTTTTGTCAGATGCATTGGCCTCGCAAGCCTTGAACTCATCAGCAGGACAAATGTTCCTTCCCCAAAATCAGTGGCAGAATTGTAGCCAAGCATTTCACCCCCAGCAAGGGATGTCATTTAACTCATGTGGCTTTCAAAGCTTGTACCAAGGCAGTTCCATATGCTCCAACCTCGTTTTGCATGATGTTAGGAACATGCAACAGTACCAAGATGTGTTTGACAAATGCTCCCACTTCGACCGACCATTTGATCAATCTTGTGTAGAGTGCACCAGAGCAATACTTAGCGTGAGAGATGCTTTATATGATCAAGTGGCCAACAACAACAACAACACTGAGAGAGCCCTATGTGGGGTAGCAACTATTGTTGCTGTTGCTGCTGGGAAACCAAACGATCCTCTTGTTGACAAATTCTTTCGCTGCTCCTCATCTACAGTTTCGGAAAAGAAAAAGGGTCGTAGACAGGTTGGCTTGAAAGAGATCACTACATGGTCTGGATTGTATTGGTTCAGCAAAAGAGAAATTGAGAATGCTATGAATTATGGTGGTGTAAAGATAAGCCTTGGACGTGGGAGTGCAGGACAGGTATATAAAGGCGTTCTACCTAGTGGTCAAGTTGTGGCCATCAAGCACTTGACAAAGAGTAACACCTCAGAGTCTTTCACTCGAGAAGTTGAAGGTCTTTCAAGGCTTCGTCATCCCAACTTGGTTTGCCTCTTTGGATGTTGCATAGAAGGAGATGAGAGATATTTAGTCTATGAATTCTGTGCAAACGGCAATCTTGCTCAACATCTCTTAAGAAGAGATAGCCACTTAACATGGGAAACAAGAGTAAGAATTTTGAGAGATTGTTCATTTGCACTCAAGTACCTCCACCATCATATCGAAGGTTGTGTGGTCCATAGAGATATAAAGCTTACGAATATTCTTTTGACTGAGAAATACCAAGCCAAACTGTCGGATTTTGGATTAGCAAAAGTGATGGGGATTAAAGAGAGCAAGGTTTTTACTGATGTTAGAGGAACCATAGGCTACATGGATCCAGAGTATATGAGTAATGCCAAGTTAACATGTGCCAGTGATGTATACAGTTTTGGTATTGTTGCTCTACAAATTTTGTCTGGACAGAAAGTCATAGAGTTAGATCTTGATGCCAGAGATCAGCTCACTAGGAAGGCAAGAGATGTTAGTATGGGAAAGCGTCCACTGTCTGATTTTGAAGATCCAAGGCTAAATGGGAAAGTTGACAAGGCAGACTTTGCAGCCATCCTTCAGATTGCAGTGCTGTGTGTTGCCAAATCAAGCAAAGGTCGCCCTACCATTGAGGTTGTTTTTGAGGAATTGGACAAAGTTTGCATGGACACAGAAACGCGAATGAAGCCAAAGAAGGAAGAGAGCTCATCATCAACATCCACCCCGAGCTCCAAATCGGCTCCTCTT	1569	0.4321	TCVLKFNTNQYVAFSECGQVSEDINTWYEDWFPNTLCCRNALTVLSDALASQALNSSAGQMFLPQNQWQNCSQAFHPQQGMSFNSCGFQSLYQGSSICSNLVLHDVRNMQQYQDVFDKCSHFDRPFDQSCVECTRAILSVRDALYDQVANNNNNTERALCGVATIVAVAAGKPNDPLVDKFFRCSSSTVSEKKKGRRQVGLKEITTWSGLYWFSKREIENAMNYGGVKISLGRGSAGQVYKGVLPSGQVVAIKHLTKSNTSESFTREVEGLSRLRHPNLVCLFGCCIEGDERYLVYEFCANGNLAQHLLRRDSHLTWETRVRILRDCSFALKYLHHHIEGCVVHRDIKLTNILLTEKYQAKLSDFGLAKVMGIKESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSMGKRPLSDFEDPRLNGKVDKADFAAILQIAVLCVAKSSKGRPTIEVVFEELDKVCMDTETRMKPKKEESSSSTSTPSSKSAPL	523

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste9g00515	523	Pfam	Protein kinase domain	230	486	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste9g00515	523	SMART	serkin_6	225	496	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste9g00515	523	FunFam	probable receptor-like protein kinase At5g59700	299	510	-	-
	Pste9g00515	523	Gene3D	Transferase(Phosphotransferase) domain 1	299	519	-	-
	Pste9g00515	523	MobiDBLite	consensus disorder prediction	498	523	-	-
	Pste9g00515	523	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	26	517	-	-
	Pste9g00515	523	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	342	354	IPR008271	GO:0004672\|GO:0006468
	Pste9g00515	523	Gene3D	Phosphorylase Kinase; domain 1	185	298	-	-
	Pste9g00515	523	SUPERFAMILY	Protein kinase-like (PK-like)	206	491	IPR011009	-
	Pste9g00515	523	Pfam	SPARK	1	155	IPR043891	-
	Pste9g00515	523	ProSiteProfiles	Protein kinase domain profile.	225	494	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste9g00515	523	MobiDBLite	consensus disorder prediction	509	523	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste9g00515	Pste-Chr9	2584559	2587450	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste9g00515	213	520	Receptor kinase-like Gene Family	AT1G16260	36.190	8.33e-57	199

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_URK-2	Pste9g00515		Pkinase	4.4e-46	CL0016