Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00485 ATGGTTTTGACTTGTTTTTCACGTTTCTTCATGTTGCAGATACTTAAGGCTGTAATGGGTAAGGAAAAGGTTCATATCAACATCGTGGTCATTGGCCATGTAGACTCTGGGAAGTCCACCACTACTGGTCACTTGATCTACAAGCTTGGAGGCATTGACAAGCGTGTTATTGAGAGATTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTTGACAAGCTTAAGGCTGAGCGGGAAAGAGGAATCACCATTGATATTGCCTTGTGGAAGTTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCTCCTGGACACAGGGATTTCATTAAGAATATGATTACTGGAACATCCCAAGCTGATTGTGCTGTTCTTATCATTGATTCCACTACTGGTGGTTTTGAAGCTGGAATTTCCAAGGATGGGCAGACTCGTGAGCATGCTCTTCTTGCCTTCACTCTTGGTGTAAAGCAGATGATTTGTTGTTGCAACAAGATGGATGCCACCACACCCAAGTACTCAAAGGCCCGATATGATGAAATTGTGAAGGAAGTCTCTTCATACTTGAAGAAAGTTGGGTACAACCCTGACAAGATTCCTTTTGTTCCAATTTCTGGTTTTGAGGGAGACAACATGATTGAAAGATCCACAAACCTTGACTGGTACAAGGGACCTACCCTCCTTGAGGCACTTGACCAAATCAATGAGCCCAAGAGGCCAACAGACAAGCCCCTCAGGCTTCCCCTTCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTCCCAGTGGGACGTGTTGAGACTGGTGTCTTGAAGCCTGGAATGGTGGTGACTTTTGGACCAACTGGACTGACAACTGAAGTTAAGTCTGTGGAGATGCACCATGAAGCTCTCCAAGAGGCTCTTCCTGGTGACAACGTGGGCTTCAATGTTAAGAACGTTGCTGTTAAGGATCTCAAACGTGGTTTCGTTGCTTCTAACTCAAAGGATGATCCTGCAAAGGAGGCTGCTAACTTCACCTCCCAGGTTATCATCATGAACCACCCTGGTCAAATTGGAAACGGCTATGCCCCTGTTCTGGACTGTCACACCTCCCACATTGCCGTCAAGTTCGCCGAACTTGTGACCAAAATTGACAGGCGATCTGGCAAGGAGCTCGAGAAGGAACCCAAGTTTTTGAAGAATGGCGATGCTGGTTTTGTCAAGATGGTTCCAACAAAACCCATGGTGGTCGAAACCTTCTCCGAGTATCCTCCACTTGGTAGGTTTGCTGTGAGGGACATGCGTCAAACTGTTGCTGTTGGAGTCATCAAGAACGTCGAGAAGAAGGATCCAACTGGTGCCAAGGTCACCAAGGCTGCACAGAAGAAAGGAAAGTGAATCGTGCAGGTCTCTTCATCAGGGGGAGTCCTTTCTTATGGTTACAATAAATGTTGGTTTCTTGCTTGTACTCTTGTGTCTACTTTAGGTAGTTTGTTTTTCGGACATAGTTTGAAGTTTCCACCTTCTTCTCGAAACTTTTGTTCCCAGAACTGGGTTCTTGATCGACGGTGGGTAGGCTTGTTTCATCATGCAGTGTTTTAATATGTTTTTGTGTTACTTTTATGAGAACCCCTGATTACAGTTTTGTAAACGCAGAGAGTTTCAGAACTTTGCTGCTTTTGTTGGTTTGCTTTAAAAAATGTCGACTTTATATTTTTGTCTAATTTTGGCCTTGATTTTATAAGCTTTTTTAGCACTGTTTTGCTTTGCTGTTGGGCGTTAAGATGCAGGAGTCTTCAATTATTCAAGTTTTTGGT 1820 0.4434 MVLTCFSRFFMLQILKAVMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGFVKMVPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAAQKKGK 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00485 466 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 344 447 IPR009001 -
Pste9g00485 466 Pfam Elongation factor Tu domain 2 266 331 IPR004161 GO:0005525
Pste9g00485 466 CDD EF1_alpha 27 245 - -
Pste9g00485 466 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 23 248 IPR000795 GO:0003924|GO:0005525
Pste9g00485 466 CDD EF1_alpha_III 341 444 - -
Pste9g00485 466 Hamap Elongation factor Tu [tuf]. 20 450 IPR004539 GO:0003746|GO:0005525|GO:0006414
Pste9g00485 466 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 79 94 IPR031157 -
Pste9g00485 466 Gene3D Translation factors 247 334 - -
Pste9g00485 466 FunFam Elongation factor 1-alpha 19 244 - -
Pste9g00485 466 Gene3D Translation factors 341 448 - -
Pste9g00485 466 PANTHER TRANSLATION FACTOR 21 451 - -
Pste9g00485 466 SUPERFAMILY Translation proteins 244 339 IPR009000 -
Pste9g00485 466 Pfam Elongation factor Tu GTP binding domain 24 240 IPR000795 GO:0003924|GO:0005525
Pste9g00485 466 Pfam Elongation factor Tu C-terminal domain 340 447 IPR004160 -
Pste9g00485 466 FunFam Elongation factor 1-alpha 341 448 - -
Pste9g00485 466 CDD EF1_alpha_II 248 338 - -
Pste9g00485 466 PRINTS GTP-binding elongation factor signature 27 40 IPR000795 GO:0003924|GO:0005525
Pste9g00485 466 PRINTS GTP-binding elongation factor signature 166 175 IPR000795 GO:0003924|GO:0005525
Pste9g00485 466 PRINTS GTP-binding elongation factor signature 122 133 IPR000795 GO:0003924|GO:0005525
Pste9g00485 466 PRINTS GTP-binding elongation factor signature 86 94 IPR000795 GO:0003924|GO:0005525
Pste9g00485 466 PRINTS GTP-binding elongation factor signature 106 116 IPR000795 GO:0003924|GO:0005525
Pste9g00485 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 267 IPR027417 -
Pste9g00485 466 Gene3D - 11 246 IPR027417 -
Pste9g00485 466 FunFam Elongation factor 1-alpha 247 334 - -
Pste9g00485 466 NCBIfam translation elongation factor EF-1 subunit alpha 19 451 IPR004539 GO:0003746|GO:0005525|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00485 Pste-Chr9 2442057 2443990 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00485 19 458 Eukaryotic Initiation Factors Gene Family AT5G60390 95.909 0.0 881
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g02161 4 15720847 15722746 Pste9g00485 9 2442057 2443990 PCT