Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00479 TGAAGAACAAGCCACATAGACGATAGTGGTCAGAAAATCTTAGTGTTGGTTGTTTCTGAGGAAATTGATTAAAGGCTTACACTAATGGGAGGTGATCATAACAGTAGTTCAGTTTCAATGGCTAGCAAGACCAAGAAGAGTGGCTCTTTTCGGTCCATTTTCATGCATGCTGATGGCCTAGATTGGTTTCTCATGATTTTTGGTCTCCTTGGGGCCATTGGTGATGGCTTAGGCATCCCTTTGCTGGCTTTTATCACCAGCAAAATTATGAACAATGTTGGTGATTTTTCCAGCAATATAGGCAGCAACACTTTCATCCATAGCATCAATCAGAATGCTGTGGCTTTGTTATATTTGGCTGGTGGGTCTTTTGTTGCTTCTTTCCTTGAGGGTTATTGTTGGACAAGAACAGGAGAAAGACAGGCTGCTAGAATGAGAGTCAGGTACCTAAAAGCAGTGTTGAGGCAAGAAGTAGCATACTTCGATTTGCATGTCACAAACACATCTGAGGTCATTACCAGTGTCTCTAACGACAGCTTCGTAATTCAAGATGTTCTTGCTGAAAAGGTACCAAATTTTGTGATGAATGCCTCTATGTTTGTTGGGAGCTACATAGTGGCTTTTGCAGTATTGTGGAGATTGGCCCTTGTGGGGTTCCCTTTTGTGGCTCTACTTGTGATCCCTGGTTTTATGTATGGGAGGACATTAATGGGGTTGGCTAGCAAGATAAGAGAAGAGTACAATAAGGCTGGTACAATAGCAGAACAGGCAATATCTTCCATCAGAACCGTTTATTCCTTTGTGGGGGAAAGTAAGACAATAGATGCTTTCTCTGAGGCTTTACAAGGCTCTGTTGAGTTGGGACTGAGACAAGGCTTAGCAAAAGGCTTAGCTATTGGAAGCAATGGTGTTGTCTTTGCTATTTGGGCTTTCATCTCATATTATGGTAGCAGATTGGTCATGTACCATGGTGCTCAAGGTGGGACTGTCTTTGCAGTTGGAGCAGCCATAGCACTTGGAGGATTAGCATTGGGTGCTGGTTTGTCCAATGTGAAGTACTTCTCAGAGGCAAGTACTGCGGGAGAACGCATAATGGAAGTGATAAAAAGGGTTCCAAAGATTGATTCGGACAACATGAGTGGGGAGATTCTAGAGAACGTTTCAGGAGAAGTTGAATTTGAGCATGTGAACTTTGTGTACCCATCAAGGCCAGAGAGTATTATTCTGAATGATTTTTGCCTAAGGATTCCAGCTGGGAAAACAGTGGCATTGGTTGGAGGGAGTGGCTCAGGAAAATCAACAGTGATATCACTTTTGCAGAGATTTTATGACCCAATAGAGGGAGAGATACGTCTTGATGGTGTGAGCATTAACAAGTTGCAACTAAAGTGGTTGAGGTCTCAGATGGGTCTGGTGAGCCAAGAGCCTGCACTGTTTGCAACCAGCATTAAGGAGAATATACTTTTTGGAAGAGAGGATGCCACTGAGGAAGAGGTTGTGGAGGCTGCAAAAGCTTCCAATTCTCATCATTTTATCTCACAGTTGCCACAAGGATACCATACTCAGGTTGGGGAAAGAGGAGTTCGAATGTCAGGGGGACAAAAGCAAAGAATTGCTATAGCACGGGCAATAATTAAAAGGCCACAAATTCTTTTGTTAGATGAAGCTACAAGTGCATTAGATTCTGAGTCAGAACAAGTTGTGCAAGAAGCACTAGACAATGTAATGGTGGGACGCACTACCATAATCATTGCTCATAGATTATCTACAATAAGAAATGCAGATATGATTGTTGTGGTCCAAAGTGGGAAAATCATGGAGATGGGGTCACACCATGAACTAATCCAAAATGACAATGGTCTTTACATCGCACTGGTTCGTGTTCAACAAGCAAGAAATGAAAAGAAAGACACCCTTTTTCACCCTTCTCTTCCTTCATCCATATTAAACAAAGACATACACAACATAAGCAATCGTAGGCTCTCCCTTGTGAGTCAATCTAGCTCTTCCAATTCAATGCCTCGTGTTGTTTGTGAGGATAATGTTGAAGAGGTTGTGGAAGATAAGAAGTTGCCACTTCCTTCATTTAGAAGGTTGCTAGAACTCAACTTTCCAGAGTGGAAGCAAGCATGTTTAGGGTGTTTGAATGGTGTGTTGTTTGGTGCAATTCATCCTATATATGGATTTATAATGGGATCGATGATATCTGTTTACTTTCTCCAAGACGATGATGAGATAAAAAATAAAACCAAGATCTATTCACTTTGTTTCCTAGGATTGGCTGTGTTCTCCTTGGTGGTTAATATCCTTCAACATTATAACTTTGCTTATATGGGAGAGTACTTAACTAAAAGGGTCAGAGAACGAATGCTTTCTAAGATACTTACTTTTGAAGTTGGATGGTTCGATCAAGATGAAAATGTCACTGGTGTTGTTTGTTCTAGACTTGACAAAGAAGCCAATGTGGTAAGGTCTTTAGTGGGAGATAGAATGGCTTTAGTGGTGCAAACCATTTCTGCCATAGTAATTGCTTTCACCATGGGTCTAATTATTGCATGGAGGTTGGCCATTATTATGATAGCAATTCAACCCATTATTATCGCTTGTTTCTACACAAGACGTGTCCTTCTTAAGAGCATGTCTAATAAGGCCATTAAGGCCCAAGATGAGAGTAGCAAGATAGCTGTCGAAGCTGTTTCCAATCTTAGAACCATCACATCCTTTTCTTCCCAAGATAGGATCCTCAAAATACTTGAAAAGGCTCAAGAAGGCCCATGTCATGAAAGCATTAGACAATCATGGTTTGCAGGTGTTGGTCTTGCATGTTCCCAAAGCCTTAGATTTTGCTCTTACGCTTTAGCCTTTTGGTATGGCAACAAACTTGTATTTCAAGGCTATATGAATGCCAAAGTACTATTTGAGACTTTTTTCATCTTAGTGAGCACAGGTAAGGTCATTGCAGAAGCTGGTAGCATAACCAATGACCTTGCTAAAGGGGTTGATGCTGTGAGTTCAGTTTTTGCAATCTTAGATAGGTACACAAAAATTGAACCTGATGACATAATAAATGGGAACAAGCTTGAAAAAATAAGAGGAAAAATAGAGCTTCTTGATGTGCATTTTGCATACCCAACAAGACCCAATGTGATGATCTTTCAAGGCTTCTCAATCAAAATAGATGCAGGAAAATCAACAGCGTTGGTAGGACAAAGTGGGTCTGGAAAATCAACAATAATAGGATTAATAGAGAGATTCTATGACCCATTAAAAGGGACAGTGAAAATTGATGGTAGAGACATAAAATCATATCACCTTAGGTCATTAAGGAAGCACATTGCTCTTGTGAGTCAAGAGCCAACATTGTTTGGTGGCACTATAAGGGAAAATATTGCATATGGAGCATCTAACGAGATTGGTGAAACTGAGATAATAGAAGCAGCTAGGGCAGCTAATGCTCATGATTTCATTGCAAGCCTAAAGGATGGTTATAACACATGGTGTGGAGATAAAGGAGTGCAACTCTCTGGGGGTCAAAAGCAAAGAGTTGCAATAGCTAGAGCCATATTAAAGAACCCAGAAGTGTTGTTGTTGGATGAAGCAACCAGTGCCCTTGATAGCCAATCAGAGAAATTGGTGCAAGATGCCCTAGAAAGGGTGTTGATGGGGAGAACTAGTGTGGTAGTGGCGCATAGGTTAAGCACCATACAAAACTGTGATCTAATTGTTGTGCTAGATAAGGGAAAAGTGGTGGAGGAAGGAACTCATTCATCTTTGTTGGCTAAGGGACCAAATGGAGCTTATTACTCTTTAGTAAACGTACAAAGATGA 3828 0.4094 MGGDHNSSSVSMASKTKKSGSFRSIFMHADGLDWFLMIFGLLGAIGDGLGIPLLAFITSKIMNNVGDFSSNIGSNTFIHSINQNAVALLYLAGGSFVASFLEGYCWTRTGERQAARMRVRYLKAVLRQEVAYFDLHVTNTSEVITSVSNDSFVIQDVLAEKVPNFVMNASMFVGSYIVAFAVLWRLALVGFPFVALLVIPGFMYGRTLMGLASKIREEYNKAGTIAEQAISSIRTVYSFVGESKTIDAFSEALQGSVELGLRQGLAKGLAIGSNGVVFAIWAFISYYGSRLVMYHGAQGGTVFAVGAAIALGGLALGAGLSNVKYFSEASTAGERIMEVIKRVPKIDSDNMSGEILENVSGEVEFEHVNFVYPSRPESIILNDFCLRIPAGKTVALVGGSGSGKSTVISLLQRFYDPIEGEIRLDGVSINKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATEEEVVEAAKASNSHHFISQLPQGYHTQVGERGVRMSGGQKQRIAIARAIIKRPQILLLDEATSALDSESEQVVQEALDNVMVGRTTIIIAHRLSTIRNADMIVVVQSGKIMEMGSHHELIQNDNGLYIALVRVQQARNEKKDTLFHPSLPSSILNKDIHNISNRRLSLVSQSSSSNSMPRVVCEDNVEEVVEDKKLPLPSFRRLLELNFPEWKQACLGCLNGVLFGAIHPIYGFIMGSMISVYFLQDDDEIKNKTKIYSLCFLGLAVFSLVVNILQHYNFAYMGEYLTKRVRERMLSKILTFEVGWFDQDENVTGVVCSRLDKEANVVRSLVGDRMALVVQTISAIVIAFTMGLIIAWRLAIIMIAIQPIIIACFYTRRVLLKSMSNKAIKAQDESSKIAVEAVSNLRTITSFSSQDRILKILEKAQEGPCHESIRQSWFAGVGLACSQSLRFCSYALAFWYGNKLVFQGYMNAKVLFETFFILVSTGKVIAEAGSITNDLAKGVDAVSSVFAILDRYTKIEPDDIINGNKLEKIRGKIELLDVHFAYPTRPNVMIFQGFSIKIDAGKSTALVGQSGSGKSTIIGLIERFYDPLKGTVKIDGRDIKSYHLRSLRKHIALVSQEPTLFGGTIRENIAYGASNEIGETEIIEAARAANAHDFIASLKDGYNTWCGDKGVQLSGGQKQRVAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVLMGRTSVVVAHRLSTIQNCDLIVVLDKGKVVEEGTHSSLLAKGPNGAYYSLVNVQR 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00479 1247 Pfam ABC transporter 1025 1174 IPR003439 GO:0005524
Pste9g00479 1247 FunFam ABC transporter B family member 4 353 608 - -
Pste9g00479 1247 ProSitePatterns ABC transporters family signature. 1146 1160 IPR017871 GO:0005524|GO:0016887
Pste9g00479 1247 SUPERFAMILY ABC transporter transmembrane region 33 347 IPR036640 GO:0005524|GO:0016020
Pste9g00479 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 601 IPR027417 -
Pste9g00479 1247 FunFam Putative ABC transporter B family member 8 648 993 - -
Pste9g00479 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1243 IPR003439 GO:0005524
Pste9g00479 1247 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 336 - -
Pste9g00479 1247 Pfam ABC transporter transmembrane region 37 305 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste9g00479 1247 Pfam ABC transporter transmembrane region 688 953 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste9g00479 1247 PANTHER ABC TRANSPORTER B FAMILY 12 732 IPR039421 -
Pste9g00479 1247 FunFam ABC transporter B family member 4 996 1247 - -
Pste9g00479 1247 FunFam ABC transporter B family member 1 24 362 - -
Pste9g00479 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 999 1246 IPR027417 -
Pste9g00479 1247 Gene3D - 361 627 IPR027417 -
Pste9g00479 1247 SMART AAA_5 390 576 IPR003593 GO:0016887
Pste9g00479 1247 SMART AAA_5 1033 1219 IPR003593 GO:0016887
Pste9g00479 1247 Pfam ABC transporter 381 530 IPR003439 GO:0005524
Pste9g00479 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Pste9g00479 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 328 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste9g00479 1247 Gene3D ABC transporter type 1, transmembrane domain 921 995 IPR036640 GO:0005524|GO:0016020
Pste9g00479 1247 CDD ABC_MTABC3_MDL1_MDL2 1006 1246 - -
Pste9g00479 1247 SUPERFAMILY ABC transporter transmembrane region 662 989 IPR036640 GO:0005524|GO:0016020
Pste9g00479 1247 Gene3D ABC transporter type 1, transmembrane domain 87 920 IPR036640 GO:0005524|GO:0016020
Pste9g00479 1247 Gene3D - 996 1246 IPR027417 -
Pste9g00479 1247 CDD ABC_MTABC3_MDL1_MDL2 363 601 - -
Pste9g00479 1247 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524|GO:0016887
Pste9g00479 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 689 970 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste9g00479 1247 CDD ABC_6TM_Pgp_ABCB1_D2_like 674 988 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00479 Pste-Chr9 2406235 2413157 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00479 21 1247 Calmodulin-binding Proteins AT2G36910 44.364 0.0 1058