Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00406 ATGGCCATCATCACCCAAAAAAACACCCAAACAAACAGAACCAATAACCCCGACTACTCCAAAGCTGAAATGGAAGAAAATCTTCTTCCAAACCAAAACCAAAACCCAAAACCAAACCCCCCCAGAAGAGTTCCTCTGCCCTGTTTCACGTTCCCTCATGTCCGACCCCGTCATCGTCTCCTCCGGCCACTCCTTCGAACGCTCCTCCGTCGAAGCCTGCCAAAATGTCAACTTTACCCCTCAACTCCCCGACGGAACCACCCCCGATTTCTCCACCCTCATCCCCAACCTCGCCCTCAAATCCGCCATCCTCAAATGGTGCAAATCCACCCAAACACCCCCTCCACACCCCAACAACAACCTCGTACAAACCTTAATCTCCTCCAACCCCAACCTCAACCTCAACCTCAACCTCAACCTCGTACACACCTTAAACTCCCCAACACTGCCCCAGAAAAATTCCCCGGCAAAGATTTGATTTTGAATTCCGTGATTGAAAAGCCACCATTGAACAAACTCTGCCACCACGCCGAAACTGAGGTTCCCATAAGGCCGACACACTTGTACACGAGCTCCGAGGAATCAATAGCGACAAGCTCAGCCTCAACGCCGCCACTTCAACTCACCACGCGCCCCAGTTGCTGCTACTACTACTCTTCCCCTTCATCCTCCGAAATCGAACCCGCCACAACCCCAGAAGAAGAAGAACTCATGACGAAGCTCAAAAGCCCCCAACTTTGCGTAATCGAAGAAGCACTCGTCTCTCTCAGAAAACTAACGAGAACAAGAGAAGAAACAAGGCTTCAACTTTGCACTCCTCGGTTGCTCTCCGCTCTACGCACACTGGTTTTGTCAAAACACGTGAACGTTCAGGTGAACGCTCTGGCATCATTGGTGAACCTCTCGTTGGAGAAGAGTAACAAAGTGAAGATAGTGCGGTCGGGGATGGTTCCGCCGTTGATCGAGGTTTTGAAGTGCGGATCCTCTGAGGCGCAGGAGCACGGTGCGGGCGCGTTGTTCAGTTTGGCACTCGATGATGATAATAAAACCGCTATTGGGGTTTTGGGTGGTTTGGCTCCGTTGCTTCACATGCTCCGATCCGAGAGTGAGCGGACTCGGCATGACTCGGCTTTGGCGCTTTACCATTTGTCTTTGGTTCAGAGCAACCGGTCCAAGATGGTTAAACTCGGTTCGGTTCCGCTCCTCTTGAATATGGTTAAGGCGGGCCATATGGTGAGTCGGGTTTTGTTAATCCTGGGTAACTTGGGTTCCGGGTCGGACGGGCGGGCTGCAATGTTGGATGCGGGTGTGGTTGAATGTTTAATTGGGTTGCTGAGCGGGACTGAGTCGGGAACCGGGTCGACTCGGGAGGGTTGTGTCGCGGTGACGTATGCATTGAGTCACGGCGGGTTGAGGTTTAAGGCGGTGGCGAAGGCGGCGGGGTTGGTGGAGGCGTTGCAAAAGATGGAGGTGGGGAGTGAGAGGGCTAAGCACAAGGTGAGGAAGATATTGGAGATTATGAGGGCAAAACAGGCGGAGGAGGAGGATGTGGATTGGGAGGAGTTGCTTGACTCGGGGTTAGGTTGTCGAACTCGGAGTCGACTCGGCTCTGGGTTGGACGAGTCAAGTGCTAACTCGGCCGAGTTTTGA 1650 0.5297 MAIITQKNTQTNRTNNPDYSKAEMEENLLPNQNQNPKPNPPRRVPLPCFTFPHVRPRHRLLRPLLRTLLRRSLPKCQLYPSTPRRNHPRFLHPHPQPRPQIRHPQMVQIHPNTPSTPQQQPRTNLNLLQPQPQPQPQPQPRTHLKLPNTAPEKFPGKDLILNSVIEKPPLNKLCHHAETEVPIRPTHLYTSSEESIATSSASTPPLQLTTRPSCCYYYSSPSSSEIEPATTPEEEELMTKLKSPQLCVIEEALVSLRKLTRTREETRLQLCTPRLLSALRTLVLSKHVNVQVNALASLVNLSLEKSNKVKIVRSGMVPPLIEVLKCGSSEAQEHGAGALFSLALDDDNKTAIGVLGGLAPLLHMLRSESERTRHDSALALYHLSLVQSNRSKMVKLGSVPLLLNMVKAGHMVSRVLLILGNLGSGSDGRAAMLDAGVVECLIGLLSGTESGTGSTREGCVAVTYALSHGGLRFKAVAKAAGLVEALQKMEVGSERAKHKVRKILEIMRAKQAEEEDVDWEELLDSGLGCRTRSRLGSGLDESSANSAEF 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00406 549 MobiDBLite consensus disorder prediction 106 130 - -
Pste9g00406 549 PANTHER U BOX DOMAIN-CONTAINING 160 508 - -
Pste9g00406 549 FunFam RING-type E3 ubiquitin transferase 232 507 - -
Pste9g00406 549 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 315 357 IPR000225 GO:0005515
Pste9g00406 549 SMART arm_5 345 385 IPR000225 GO:0005515
Pste9g00406 549 SMART arm_5 304 344 IPR000225 GO:0005515
Pste9g00406 549 SMART arm_5 425 467 IPR000225 GO:0005515
Pste9g00406 549 SMART arm_5 263 303 IPR000225 GO:0005515
Pste9g00406 549 SMART arm_5 386 424 IPR000225 GO:0005515
Pste9g00406 549 Coils Coil 249 269 - -
Pste9g00406 549 MobiDBLite consensus disorder prediction 76 155 - -
Pste9g00406 549 SUPERFAMILY ARM repeat 237 488 IPR016024 -
Pste9g00406 549 Gene3D - 227 503 IPR011989 -
Pste9g00406 549 Pfam Armadillo/beta-catenin-like repeat 345 384 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00406 Pste-Chr9 1954591 1956240 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00406 160 549 U-box Gene Family AT5G40140 59.000 4.46e-140 414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g00406 9 1954591 1956240 Pste9g00406 9 1954591 1956240 ECH
Pste9g00406 9 1954591 1956240 Pste5g00966 5 6345274 6350718 PCT