Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00343 CATCATCCCAATCAAAGCTCAAACAACTTCAACTGCCCAAAAAACAAAAGCCAAAACATCAACCAAACAAGCATAGCTGCTTTGCCAAAAGTCTTGGGTTCAACACATGTTTTTCTTCCAATCCCACCACATGTCAACCACCACTTTCTTCCACAATAAGAGAGATTTATAAGGTGAATTCAATGGTTATTCAAATAGAGTCACAGCTCCTTTATTATTGTATGTCTGGTTTAACGTTGAAAAATATTGATAAAGCTATGAAATCAAAAGCTACAAATTTTTTCGGTGTTTATTTATTTCAATATTAAACCAAGCACTTAAACTATGTATAAAAAATTAGGTAAAATTACTTTCCCACGTGTATGTGACACATGTGGCTCTGCCTCATGTGCTGTCTTCTGTCCTATCCATTCAACGTTCATGTGTCTGAGTTGTGACATTATTGTTCATATGAAGTCACAGCACAAACGCATGAACGTGTGTGATGCATGTGTCCGTCAGCCTGCAGAATTTTACTGCAGCGCTGACGTGGCTTTTCTATGCTCTTCATGTGATCAGGAAATCCACTCTGTGAACCCTCTTGCCAGCCGCCACGAGCGTGTTTCTGTTCTCACCATCGGGGAAGAGAATCACTGTGTTCATGATGACGACGTGGCAGAAGCTGCTTCGTGGTTAGTGTTGAACCCCGAGAAGAATGATGATTGTGAAGGGTTAGTGTTAAAGGTTGATGATGATGATGGGTTGTGTGATGTTGATTATTATGATGTTCAGATGCAACACCAGCAGGTACCACGTTTTGAATTGGGTTTGGAGTTTGATTCCTCAAAATCTGCATATGATTATGGCTCTTTAAGTCAAAGTGTCTCAATTTCATCAACAGATGTTAACAGTGTACCAAAATCAACAATCAGCGAGGTCTCAGTTTCTGATTCAATCAATCCCCCAATGGGCACAACACTAGACCTAATAAATTCTGGCCCTAATATTTTGATGCCTTCATCCTATCTCACATACCGAGAGGCCAGAGTTCTAAGGTACAAAGAGAAAAAGAAGGCAAGAAAGTTTGAAAAGAAAATCAGATATGCTTCAAGGAAGGCCTATGCTGAGATTAGACCCCGTATAAAGGGTCGATTTGCAAAGAGAAACAATGTTGAAGCTGAAATGGACCATGTGTTATCCTCAACTCTAATCACAAAAGCAGAATATGGTGTTGTTCCATCTTTCTGAATATCCAGTTTTATGTATGCATGGCCAGAAAAAGTATAGTAATAAGGATTTGTACATGAGAGGGTAGTGATGATCATCTGGAGCAAGAGTAATATAGAATCCACAATCCTCTTCAATGTGGTTTTTGTATCTTGCACTATATATATTTATGTTTTATAATTCCTTAATATATCCTCTTGTGTGCATGATATATGGTATGGTTTGTAAATTAATGCACTACTCAATGTTATATATATTATTGAATTGCTGTGAAACTTTAA 1487 0.3793 MYKKLGKITFPRVCDTCGSASCAVFCPIHSTFMCLSCDIIVHMKSQHKRMNVCDACVRQPAEFYCSADVAFLCSSCDQEIHSVNPLASRHERVSVLTIGEENHCVHDDDVAEAASWLVLNPEKNDDCEGLVLKVDDDDGLCDVDYYDVQMQHQQVPRFELGLEFDSSKSAYDYGSLSQSVSISSTDVNSVPKSTISEVSVSDSINPPMGTTLDLINSGPNILMPSSYLTYREARVLRYKEKKKARKFEKKIRYASRKAYAEIRPRIKGRFAKRNNVEAEMDHVLSSTLITKAEYGVVPSF 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00343 300 Pfam B-box zinc finger 49 95 IPR000315 GO:0008270
Pste9g00343 300 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 14 287 IPR045281 GO:0009909
Pste9g00343 300 SMART bboxneu5 53 95 IPR000315 GO:0008270
Pste9g00343 300 SMART bboxneu5 9 52 IPR000315 GO:0008270
Pste9g00343 300 ProSiteProfiles CCT domain profile. 231 273 IPR010402 GO:0005515
Pste9g00343 300 ProSiteProfiles Zinc finger B-box type profile. 9 52 IPR000315 GO:0008270
Pste9g00343 300 CDD Bbox1_BBX-like 52 95 - -
Pste9g00343 300 ProSiteProfiles Zinc finger B-box type profile. 48 95 IPR000315 GO:0008270
Pste9g00343 300 Pfam CCT motif 231 273 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00343 Pste-Chr9 1630866 1634707 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00343 9 300 C2C2-CO-like Transcription Factor Family AT3G02380 41.935 8.45e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pste9g00343 zf-B_box 2.4e-08 No_clan