Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00340 TCGCAACACAAACTCAAACACAAACACTTTTGATATACAATATGTTGAAGGAAGGCACCAACAACGTTGTTGGTGGCAGCACCTGGTCACGTGTCTGCGACACGTGTCGGTCAGCACCATGCATACTCTACTGCCATGCAGACTCAGCATACCTGTGCTTGTCCTGTGATGAGCGTGTCCACGCAGCTAATCGTGTGGCCTCACGACACAAGCGTGTGTTGGTATGTGAAGCGTGTGAGCGTGCTCCTGCAGCGTTTCTATGCAAAGCTGATGCTGCTTCTCTTTGTTCCTCCTGTGATGCTGACATTCACTCTGCAAACCCTCTTGCCAGCCGCCACCACCGTGTGCCTATTCTTCCAATTTCAGGGCCCCTCTTGGAAGAATTCGAAGAGGAAAAGGTTGTTGTTGTTGTTGACGACGGCCATTATGATAATGATGAAGATGAAATTGAAGCTGCTTCATGGTTGCTGCCAAATCCTTTGAAGGATGATGATGATAAGGAAGATCAGAATGATGATGATAATGGTTTCTTGTTTGGTTATAAGTATTTGGATCACAACCTTCAGCAGCAGATTTACAACCACAACAACAACACCGTCCCTCAGAACATCTATGCACTGGTTCCAGTTCAGGTGCCACAGCAATTGCAGCACTTTAAACCGGGTTTGGACTTTGACTCATCAAAAGCAGGGTTCAGTTATGAAGGTTCTCTTAGTCAAAGTGTTTCTGTTTCATCAATGGATGTTGGGGTTGTGCCAGAATCAACAATAAGTGACATCTCAATGTCCCACTCAAAGTCTTCTATAGGGACAAATGACCTATTTCCTCCTCTTCCCATGTCTTCACATTATCTTACACCAATGGACAGAGAGGCCAAAGTTCTAAGATATAAAGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAAATAAGGTATGCCTCGAGGAAGGCTTATGCAGAAACTAGACCAAGAATAAAGGGTCGATTTGCTAAGAGAACTGATGTAGAAGCTGAAGTGGACCAGATGTTCTCCTCAACACTGTTCAGTACCGAAGTTGGAGATAGCTTTTTCGCCTCTTTCTAGAATGGATTGAAATTAACTAATGGCCAAAACACAGAAGAGAGGGTTGATAATATAACCGTATCTTTGGAAGCCACCACCACTTCATGTAATTCTTGTATGAAGTCTAATTAGTTTGGTCTTATTTTATATATTTGTTTCTATACTTATGCTTTATAAATATATTTCATATGTTAAGTCTCTAAA 1265 0.4206 MLKEGTNNVVGGSTWSRVCDTCRSAPCILYCHADSAYLCLSCDERVHAANRVASRHKRVLVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPISGPLLEEFEEEKVVVVVDDGHYDNDEDEIEAASWLLPNPLKDDDDKEDQNDDDNGFLFGYKYLDHNLQQQIYNHNNNTVPQNIYALVPVQVPQQLQHFKPGLDFDSSKAGFSYEGSLSQSVSVSSMDVGVVPESTISDISMSHSKSSIGTNDLFPPLPMSSHYLTPMDREAKVLRYKEKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSSTLFSTEVGDSFFASF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00340 346 Pfam CCT motif 276 318 IPR010402 GO:0005515
Pste9g00340 346 ProSiteProfiles Zinc finger B-box type profile. 57 104 IPR000315 GO:0008270
Pste9g00340 346 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515
Pste9g00340 346 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 19 332 IPR045281 GO:0009909
Pste9g00340 346 CDD Bbox1_BBX-like 61 104 - -
Pste9g00340 346 SMART bboxneu5 14 61 IPR000315 GO:0008270
Pste9g00340 346 SMART bboxneu5 62 104 IPR000315 GO:0008270
Pste9g00340 346 CDD Bbox1_BBX-like 18 61 - -
Pste9g00340 346 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Pste9g00340 346 Pfam B-box zinc finger 60 104 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00340 Pste-Chr9 1615961 1618738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00340 1 346 C2C2-CO-like Transcription Factor Family AT3G02380 52.186 1.83e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pste9g00340 zf-B_box 9e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g00340 9 1615961 1618738 Pste5g00507 5 3324802 3327011 PCT