Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00337 ATGGCATGGGTTAGGCATCAAATCCAGCAAAAAGATGGCTACTTGAGCTACTCACCACCCCTTTTGACTTCTTCTTCTTCTTCTTCACCCCCTTACCCTCCCGGTGCTGCTTTTCACAAGGAATCGTCCGTGCCTTCTTCAACACCACCATCTTCAGGCACTAGAATTAGTCCTGCTGTTCTTTTTATCATAGTGGTTCTTGCTGTTTTGTTTTTCATATCTGGTCTCCTCCATCTGCTTGTTAGATTTCTCATAAAGCACCCATCTTCTTCTGCTTCTGCTCAATCTAACAGACACCAAGAAATTTCCACATCTGATGCTCTCCAGAGGCAGCTGCAGCAGCTCTTCCACCTGCATGACTCTGGCTTGGATCAAGCTTTCATTGATGCTCTTCCTGTTTTCCAGTACAAGGAGATAGTTGGGCTGAAAGAGCCTTTTGACTGTGCTGTTTGTTTGTGTGAGTTTTCTGAGAAGGATAAGCTGCGGTTGTTGCCTATGTGCAGCCATGCCTTTCACATAAGTTGTATAGACACATGGCTTTTGTCAAACTCCACATGCCCTCTTTGTAGAGGAACACTTCTTACTCCTGGATTCTCTATTGAGAATCCTATATTTGATTTTGATGATCTGAGGGATGATGAGGGGTGCCCTTGTAATGGGGAGAATGGATTCAGTACTAGACAGAAAGCAGTTGTGGTTGCTGAAAGTGTGGAGAAAGGTGTTTTCCCTGTGAGGCTTGGTAAATTCAAGAAGATGAATGTGGAGGACCTCAGGGTGGCCTTGAACCATGAAAGTAAGGGTCAAGTCACAAGGCTCACCAAAGGAATGGAACATGCTGATGGGAGGCTTTCGGTAGAAGGGGATGTGGAAGGAAAGAAGATTAGTAGTGTCAGTAAAGGTGACAGCTTTTCTGTGTCCAAAATCTGGTTGTGGCCAAAGAAGGGGAAATTACCTACTTTGGATCCTCAAATGGGCATGCCAATGCCATCTTATCTAAACACAGATTTTCAAAGGAAGAGGGAAACAGAAGGGGAATGA 1038 0.447 MAWVRHQIQQKDGYLSYSPPLLTSSSSSSPPYPPGAAFHKESSVPSSTPPSSGTRISPAVLFIIVVLAVLFFISGLLHLLVRFLIKHPSSSASAQSNRHQEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTPGFSIENPIFDFDDLRDDEGCPCNGENGFSTRQKAVVVAESVEKGVFPVRLGKFKKMNVEDLRVALNHESKGQVTRLTKGMEHADGRLSVEGDVEGKKISSVSKGDSFSVSKIWLWPKKGKLPTLDPQMGMPMPSYLNTDFQRKRETEGE 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00337 345 Pfam Ring finger domain 147 190 IPR001841 -
Pste9g00337 345 SMART ring_2 148 189 IPR001841 -
Pste9g00337 345 SUPERFAMILY RING/U-box 127 196 - -
Pste9g00337 345 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 51 309 - -
Pste9g00337 345 MobiDBLite consensus disorder prediction 25 50 - -
Pste9g00337 345 CDD RING-H2_EL5-like 147 190 - -
Pste9g00337 345 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Pste9g00337 345 FunFam RING-H2 finger protein ATL46 110 195 - -
Pste9g00337 345 MobiDBLite consensus disorder prediction 320 345 - -
Pste9g00337 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 195 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00337 Pste-Chr9 1603686 1604820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00337 53 199 C3H Transcription Factor Family AT2G18650 61.486 1.75e-48 166