LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste9g00322	ATGTCAACGCCATTGCTTACAAACTTGCAGCGGGTTCAGGCACTACTCAATGCACCTAATACCATTAATGCATCCAATAAAAGATGGCACTCTGCATTCATTGCCATCTATTGTTCTCGAGCAATTATGTCACACTTCACTCTTAACAAAACAAACAAAACCAAAGCAAAAGCCTCACCTATACCAACACCAACACCATCTTTCACTGTTGTTGATTTGATCCCTCAACATTCTTTTGATATAGACCAAACAACCCTCACTGATATTGTCAAAGAAAAAGACCTACACAACCTTGATAAACTTGGTGGGGTTGAAGGGGTGGCAACAGCCCTTGAAACCCACGTGGAGTATGGTATCAAAGGTGCTGATGATGATGCTGAAGACATCACACGTAGAAAACACGTGTTTGGTTCCAACACTTACAGCAAGCCACCTTCCAAAGGGTTCTTTCATTTTGTGGTGGAAGCCGTTAAGGATGTCACTATTCTTATCCTTTTGGTTTGTGCTGCTCTTTCCCTTGGCTTTGGCATCAAGGAGCATGGCATCAAAGAAGGTTGGTACGATGGTGGAAGCATCTTTGTTGCCGTGTTTATTGTCATTTCTTTGTCATCAATAAGTAACTTCAGGCAGAACAGACAATTTGACAAGTTGTCTCAAGTGAGCAATGACATACAAATTGATGTGGTGAGAAGTGGTAGGCGCCAAAATATCTCAATCTTTGAGATCGTGGTTGGTGATGTCATTTGCTTGAAGATTGAGATCAAGTGCCCGCAGATGGGCACCAAGGTGGCTGATGGATATGCCAAGATGCTTGTTACCTCAGTTGGTATGAACACAACATGGGGCCAAATGATGAGTTCAATAAGTAGAGATATCAATGAGCAAACTCCATTGCAAGAGAGGCTAAACAAGCTTACATCATCCATTGGAAAGGTTGGTTTGGCTGTGGCTTTTCTTGTCCTTGTTGTTTTGTTAGTTAGGTACTTCACCGGAAACACAAAGAATGAGAAAGAAGCTAGAGAGTTCAATGGAAGCAAGACCAAATTTGATGATATAATGAATGCTGTTGTGGGAATTGTTGCTGATGCAGTTACCATTGTTGTTGTTGCAATCCCTGAGGGTCTTCCACTTGCTGTCACCCTTACCCTGGCTTATTCAATGAAGAAAATGATGGCTGATCAAGCAATGATGAAAGTGACCAAGTTTTGGCTTGGTTTAGAACCTGTTCTAGAAAGTGCCTACACAAATGTTACTCCATTTGTTCTTCAACTGATAAAAGAAGGAGTGGCTCTCAACACAACAGGTAGTGTGCAAAAGTCCAATAAATCAGGTTGTGAATTTGAGTTTTCAGGTAGTCCCACAGAGAAAGCAATCCTATCATGGGCAGTTTCGGAATTGAACATGGAGATGGAGAACTTGACAAGAAGCTGTTCTATCATTCATGTTGAAACATTCAACTCAAAGAAGAAAAGAAGTGGAGTTTTGTTGAGAAGAAATGCAGACAACACAATTAATGCACACTGGAAGGGAGCAGCTGAGATGGTACTAAAGATGTGTTCAAGATACTATGATGCTTCTGGCATTGTGAAAAATCTTGACAGTGACAGCATGATGAAGTTTGAACACATTATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGCATTGCTTTTGCCCATGTAGAAGTAGCCGAGGAAGAGGTTGGATATGAAGAAGGCAACACAATGGTGAAAGTGAAAGAGAATGGTTTAACATTGTTAGGATTTGTGGGGATTAAGGATCCATGCCGTCCAGAGGTGAAGAGTGCTGTGGAAGCTTGCCAACATGCCGGTGTGAATGTAAAAATGATCACTGGTGACAATGTTTTCACTGCAAAGGCCATAGCAACTGAATGTGGCATACTTCGGCCTAATCAGGACACAATTGGAGCAGTGATTGAAGGAGAGGAATTTCGAAACTACACACCTGAAGAGAGATTGGAGAAGGTGGACAAAATCTGTGTGATGGCAAGATCTTCTCCTTTTGACAAACTTATAATGGTTCAATGCCTGAAGCAGAAAGGCCATGTGGTTGCTGTCACTGGAGATGGAACAAATGATGCACCAGCACTCAAGGAAGCTGATATTGGACTCTCTATGGGAATTCAAGGTACTGAAGTGGCGAAAGAGAGCTCAGATATTGTTATATTGGATGACAATTTTGCATCTGTGGTCACTGTCTTAAGCACTTGCAATCAACTTCGTGGCAGCAGTATCAGCTGGGAAGTGCCACTCACAGCAGTACAATTATTATGGGTGAACTTGATCATGGACACATTAGGTGCTTTGGCTCTTGCAACAGAAAAGCCTACCATGGAGCTGATGGATCAACCACCAGTAGGTAGAACAAAACCTCTCATCACTAATGTCATGTGGAGGAATCTATTGGCTCAAGCTTTGTACCAAATAGCAGTTTTGCTGACCCTTCAATTCAAAGGTGAGTCTATCTTTGGTGTTACATCTGGGGTTAATGACACATTGATTTTCAACACATTTGTTCTATGCCAAGTCTTCAATGAGTTCAATGCAAGGAAGATGGAGAAGAGGAATGTTTTCAAAGGCATACACAAGAGCAAGTTGTTTTTGGGCATTATTGGCATAACAATAATCCTTCAGGTGGTGATGGTTGAGTTTCTGAAGAAATTTGCTGATACACAGAGGCTAAATTGGGGGCAATGGGCTATTTGCATTGGTCTAGCTGCTATTTCCTGGCCAATTGGTTGGGTTGTGAAGTTGATACCTGTCCCAGAGAAACCATTGCTCGATATTTTGAGAATGAAAAAATGA	2823	0.4173	MSTPLLTNLQRVQALLNAPNTINASNKRWHSAFIAIYCSRAIMSHFTLNKTNKTKAKASPIPTPTPSFTVVDLIPQHSFDIDQTTLTDIVKEKDLHNLDKLGGVEGVATALETHVEYGIKGADDDAEDITRRKHVFGSNTYSKPPSKGFFHFVVEAVKDVTILILLVCAALSLGFGIKEHGIKEGWYDGGSIFVAVFIVISLSSISNFRQNRQFDKLSQVSNDIQIDVVRSGRRQNISIFEIVVGDVICLKIEIKCPQMGTKVADGYAKMLVTSVGMNTTWGQMMSSISRDINEQTPLQERLNKLTSSIGKVGLAVAFLVLVVLLVRYFTGNTKNEKEAREFNGSKTKFDDIMNAVVGIVADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMMKVTKFWLGLEPVLESAYTNVTPFVLQLIKEGVALNTTGSVQKSNKSGCEFEFSGSPTEKAILSWAVSELNMEMENLTRSCSIIHVETFNSKKKRSGVLLRRNADNTINAHWKGAAEMVLKMCSRYYDASGIVKNLDSDSMMKFEHIIQGMAASSLRCIAFAHVEVAEEEVGYEEGNTMVKVKENGLTLLGFVGIKDPCRPEVKSAVEACQHAGVNVKMITGDNVFTAKAIATECGILRPNQDTIGAVIEGEEFRNYTPEERLEKVDKICVMARSSPFDKLIMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVVTVLSTCNQLRGSSISWEVPLTAVQLLWVNLIMDTLGALALATEKPTMELMDQPPVGRTKPLITNVMWRNLLAQALYQIAVLLTLQFKGESIFGVTSGVNDTLIFNTFVLCQVFNEFNARKMEKRNVFKGIHKSKLFLGIIGITIILQVVMVEFLKKFADTQRLNWGQWAICIGLAAISWPIGWVVKLIPVPEKPLLDILRMKK	940

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste9g00322	940	Gene3D	-	152	401	-	-
	Pste9g00322	940	PRINTS	H+-transporting ATPase (proton pump) signature	725	750	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Pste9g00322	940	PRINTS	H+-transporting ATPase (proton pump) signature	693	709	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Pste9g00322	940	PRINTS	H+-transporting ATPase (proton pump) signature	540	558	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Pste9g00322	940	SUPERFAMILY	Calcium ATPase, transmembrane domain M	745	927	IPR023298	-
	Pste9g00322	940	PANTHER	CATION TRANSPORTING ATPASE	259	742	-	-
	Pste9g00322	940	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	396	599	IPR023299	GO:0000166
	Pste9g00322	940	Gene3D	-	428	594	IPR023299	GO:0000166
	Pste9g00322	940	SUPERFAMILY	HAD-like	580	740	IPR036412	-
	Pste9g00322	940	FunFam	Calcium-transporting ATPase	395	594	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste9g00322	Pste-Chr9	1513382	1516459	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste9g00322	12	940	Primary Pumps ATPases	AT3G22910	59.941	0.0	1095

Showing 1 to 1 of 1 entries