Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00318 ATGTTTGTTTTTCCGAGAGACTCTAGGACTAGGAGAGGATCAATGGTTGAGAGGGGTGTAAATGAGGGGAGAAGCATGTCCATAAATGACTTGGAGAAGCTTCCATGTTATTATTATGTTGCCAAAGGCAACACAAGCAGTCCTGTGGATTGTGCAGTTTGCTTGGAGAGCCTCATCACAGGAGATAAATGCAGATTGTTACCTATGTGCAAGCACAGTTTTCATGCCCAATGTGTGGATACATGGCTTCTAAAGACACCCACATGTCCAATTTGCCGGTCTAATGCTCATTCTCTTCTTGGAAATCAAGTTGTGAGTAACAATGGTTGCATTATTGAACCAAATGGTGGGTCTAGGGAGAGCCAAACCACCACAATAAGTTAG 384 0.4323 MFVFPRDSRTRRGSMVERGVNEGRSMSINDLEKLPCYYYVAKGNTSSPVDCAVCLESLITGDKCRLLPMCKHSFHAQCVDTWLLKTPTCPICRSNAHSLLGNQVVSNNGCIIEPNGGSRESQTTTIS 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00318 127 SUPERFAMILY RING/U-box 44 102 - -
Pste9g00318 127 SMART ring_2 51 92 IPR001841 -
Pste9g00318 127 FunFam RING-H2 finger protein ATL2K 26 99 - -
Pste9g00318 127 Coils Coil 126 127 - -
Pste9g00318 127 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 22 100 - -
Pste9g00318 127 Pfam Ring finger domain 50 93 IPR001841 -
Pste9g00318 127 ProSiteProfiles Zinc finger RING-type profile. 51 93 IPR001841 -
Pste9g00318 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 99 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00318 Pste-Chr9 1503051 1503434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00318 31 95 C3H Transcription Factor Family AT2G18650 53.030 6.03e-19 79.3