Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00310 GAAGTGGCCATTGTTCGGACAACTTTAGTCGCAGAAGACACTCACAAAGACACAGAGAGAGAGAGTGCGTTGACGACACCAAAAAGGGTCGCCGGAAATAGTATCTCCGTCGACCGAGACGGCGAAGAGAGTGGATGCGGCGGTGGTGCTGTCGAAACTGAGTCCGAAAAAGTTGAAACTTGGGTGGGTCTGGCGGTGTGTGATGGGATCTTGCATATGCCCGTTGGAGACTCCGGCGAGAGTTCTCATAATCTCTTTCTCTCGCCGGAAATTTCTCCGGTAGTGGTGATTGACTGGAGTGACATGGAGTCTGGAAGGCTTTACTTTGATGCCTCTGCTTCTCGCGGGAACAACATGCTCTTCCTCGGCAACACTGAACTAGCTTTTCGAGGAAGATCCATGATAAGCATGGAGGAAACCTCTAAGAGGCGATCATTCTTCACCTCGCCAGATGAACTGTATGACGAGGAGTATTATGAGAAGCAGTTGCCAGAGAAGAAGCACCGCCTCAGTTCCGAACAGATTAATATATATTGTTTCATCCAAATAACCAAAGCTGAAGATATGAGAAAGAGGAGTTCTTGCTACACACTCTTTCTAAGAATGCTTGCCATCAATATTAATGTCCATCTATTGGAGAAGAGCTTTGAGGAAGAGAACAAACTGGAGCCTGAGAGGAAGACCCAGTTGGCTAAGAAGCTGGGATTGCAGCCCAGGCAGGTGGCTGTGTGGTTTCAGAACCGCAGAGCTCGATGGAAGACCAAACAACTTGAAAGGGATTATGATGTTCTCAAGTCTTCATACGATACCCTACTTTCATCCTATGATTCAATTATGAAGGAGAACGAGAAACTCAAGTCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGAGGTGCCAGAGGAACCATTATATGACAAGAAAATTGATCCACTTCCGGTAAATGATATAGCTCCAATTTTCAGCACAAGAGTAGAGGACCACCTGAGCAGTGGGTCTGTTGGAAGTGCAGTGTTGGACGAGGATAGTCCACAAATGGTCGTTGACAGTGTTGATTCATACTTTCCAACTGACAACTATGGTGGATGTGTGGGCCCAGCTGAAAGGGCTCAGTCAGAGGAGGAGGATGGGAGTGATGATGGGAGGAGTTACTTGGATGTGTTTGTGGTATCTGAAACTGAGCACCAAAACCATGAGGAAGGAGAGGCACTGGGTTGGTGGGCTAATATGTATTATGTTGGATAAATGGTAATGCAGCAGTAATTTTTAAAGTAGATGCATAATTAAGGAGAGGTAATAATGTTGTATAATTAGATGTATCACGTGGGCAAGGAGGAAAAGTAAACGCCTGCTATGGGTGGCTAGGACCCCTAAGAGTTGGAGTGTCCTTAAGCCGAGTTTAATAAATAAGGTCTAGCAGTTTGGTCAGTCGTGTCTCGTGTTGGTTAAAGTTTCTGTACTTCCAAATCACAGTAAGTTTATTTCTCTGTCAAGTATAAAAACATAGTTAATTAGTGAGTAATCCATTTTGAGTTGTCCCTTTTTTTTTTCACTCTCCTGAACCCACCCACCTCCACAACTTTCGAAAACCATTTGTATAATAACTTAATCCAGAATCGAATCGAGGGTGAGGCCCACAAAAGAGGCAAAGCATTTCCATTATCTATTTTTC 1684 0.4442 EVAIVRTTLVAEDTHKDTERESALTTPKRVAGNSISVDRDGEESGCGGGAVETESEKVETWVGLAVCDGILHMPVGDSGESSHNLFLSPEISPVVVIDWSDMESGRLYFDASASRGNNMLFLGNTELAFRGRSMISMEETSKRRSFFTSPDELYDEEYYEKQLPEKKHRLSSEQINIYCFIQITKAEDMRKRSSCYTLFLRMLAININVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDTLLSSYDSIMKENEKLKSEVVSLNEKLQVQAKEVPEEPLYDKKIDPLPVNDIAPIFSTRVEDHLSSGSVGSAVLDEDSPQMVVDSVDSYFPTDNYGGCVGPAERAQSEEEDGSDDGRSYLDVFVVSETEHQNHEEGEALGWWANMYYVG 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00310 418 SUPERFAMILY Homeodomain-like 208 266 IPR009057 -
Pste9g00310 418 PRINTS Lambda-repressor HTH signature 235 251 IPR000047 GO:0003677
Pste9g00310 418 PRINTS Lambda-repressor HTH signature 226 235 IPR000047 GO:0003677
Pste9g00310 418 Gene3D - 207 253 - -
Pste9g00310 418 FunFam homeobox-leucine zipper protein ATHB-6-like 204 249 - -
Pste9g00310 418 Pfam Homeobox associated leucine zipper 255 297 IPR003106 GO:0006355|GO:0043565
Pste9g00310 418 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 157 359 IPR045224 GO:0003700
Pste9g00310 418 ProSiteProfiles 'Homeobox' domain profile. 212 255 IPR001356 GO:0003677
Pste9g00310 418 MobiDBLite consensus disorder prediction 32 52 - -
Pste9g00310 418 SMART HOX_1 197 259 IPR001356 GO:0003677
Pste9g00310 418 Coils Coil 275 302 - -
Pste9g00310 418 CDD homeodomain 209 256 IPR001356 GO:0003677
Pste9g00310 418 ProSitePatterns 'Homeobox' domain signature. 230 253 IPR017970 GO:0000981|GO:0006355
Pste9g00310 418 Pfam Homeodomain 210 253 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00310 Pste-Chr9 1476544 1480019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00310 102 412 Homeobox Transcription Factor Family AT3G01470 52.366 1.53e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste9g00310 Homeodomain 3.4e-15 CL0123