Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00308 CAACAACAATAGTAGCATAAATGAGTAGTGAAAGGGACATGTCTAATAAGGATCTTGGTATTAGGCTCTTTGGAATGAAGATTCCGGTGCCGGAATGTCAGATTCCGGTTAGTTCTCAAATGGGGTGTCAGATTCAGGCCAACTCTGCAACCATGAATGCTTGCAGTGTCTTAAAGAAAACAGAAGTTGAAATGCCTTGTGCTGAAAACTCTGAGCAACCAGAGAATTCTTCTGATTTAAGGGATAGCAAACAAGAGTCCCTACATAATAATGTAAAGGAAAATGGGTCAAAAGTACATGTCAAGCCTGTGGAAGATAATATGGAGAGTAGCAGTAATGATCAAGATAAAATCTTCAAGAAACCAGACAAGATTCTTCACTGCCCCCGATGCAACAGTTTAGACACTAAATTCTGTTATTTCAATAACTACAATGTCAATCAACCTCGGCATTTCTGCAAGAACTGTCAAAGGTATTGGACTGCAGGAGGAACAATGAGAAATGTTCCTGTGGGTGCTGGGAGACGAAAGAACAAGCACCTAGCTTCACAGTATCGGCACATTATTGTAACTTCTGATGGAATTCCAACCACCAGGTTTGAAACCAACAACACTTCTAGTCACCAACTTGTCTCAACTCTTGAATCTGCTGCTGTTTTCCGGTCTTCAATGGATAATGGTACTGTATTGAAATTTGGTCCAGATGCCCCTCCTCTCTGTGAATCCATGGAGTCAATGCTTAATCTTAAAGAACAAAAAAGAAGTGTTGATGAAAACTATTCTAAATGTGCAGAAAATGGGGAGGAGGAAGTATCAGTATGTGGATCGTCTGTGACCAATGCTTGTACTCCAAGAAACGAGATATCAGACCATAATGCATCGAAACCTTTGCAGTGTTATCCTGTTCCTCCATGGATTTTCCCTTGGACTCCAGGTTGGAACAATGTTGCTTCCACAGCAGCAGTTCACCCATCTTCACTGCACACATATAACCCTTTTACTGCCAATCCCACCTCAATGCAGTGGTGTCCCACGCCAATGGTGGCGGTTCCAACCATCTGTCCTCCAAGCTTTCCCTTGCAATTTGTTCCAGGATCATACTGGGGTGGACCACCAATGTGGGGTACCGGAACAGGACCTGTTTCAACGGGTGTTACAACGGGTTTCAATGTTTGCCTTTCACCTACTTCCTCTACTAGTAACAGCTGCTGCTCAGGCAACGGCTCCCCAACACTTGGCAAACACACAAGAGACGCTGTTTCCACAGATGAAGAGAGATCAGACATGTGTGTTTTGGTTCCAAAGACACTTAGAATTGATGATCCAAATGAGGCCTCAAAATGCCCTTTATGGACTACATTAGGAATCAAGGTTGATAACCTGCAATCTACAACAGAAGATGATATCTCCAAATGTGCAAAGCCTAAAGAAGGCAAGGACCGAGTATTGGGTGTGTCTCAAATCTTGGAAGCTAACCCTGCAGCTATTTCTCGTGCTAATGCATTCCAAGAGAGCATACAATGAGTTTCTTTCCAGCTTCTACTTTTCCCTTGATGAAAATCTTGTGCATATTGCTGGATTCACATGCAGAAAAACTGTTTTGCAGGTAGCTTTGTTACTTTGTGTAGTCCATTGTGTAACCTCATTTTGATGTACTTAAATCTATTTTTGAGTTACACCTCTCTGAAATTGATGATTCTTGGAAACTCAAGTG 1713 0.4221 MSSERDMSNKDLGIRLFGMKIPVPECQIPVSSQMGCQIQANSATMNACSVLKKTEVEMPCAENSEQPENSSDLRDSKQESLHNNVKENGSKVHVKPVEDNMESSSNDQDKIFKKPDKILHCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRHIIVTSDGIPTTRFETNNTSSHQLVSTLESAAVFRSSMDNGTVLKFGPDAPPLCESMESMLNLKEQKRSVDENYSKCAENGEEEVSVCGSSVTNACTPRNEISDHNASKPLQCYPVPPWIFPWTPGWNNVASTAAVHPSSLHTYNPFTANPTSMQWCPTPMVAVPTICPPSFPLQFVPGSYWGGPPMWGTGTGPVSTGVTTGFNVCLSPTSSTSNSCCSGNGSPTLGKHTRDAVSTDEERSDMCVLVPKTLRIDDPNEASKCPLWTTLGIKVDNLQSTTEDDISKCAKPKEGKDRVLGVSQILEANPAAISRANAFQESIQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00308 500 MobiDBLite consensus disorder prediction 59 109 - -
Pste9g00308 500 ProSitePatterns Zinc finger Dof-type signature. 121 157 IPR003851 GO:0003677|GO:0006355
Pste9g00308 500 PANTHER CYCLIC DOF FACTOR 2 5 498 IPR045174 GO:0003700|GO:0006355
Pste9g00308 500 MobiDBLite consensus disorder prediction 68 109 - -
Pste9g00308 500 ProSiteProfiles Zinc finger Dof-type profile. 119 173 IPR003851 GO:0003677|GO:0006355
Pste9g00308 500 Pfam Dof domain, zinc finger 116 173 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00308 Pste-Chr9 1446180 1449112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00308 11 498 C2C2-Dof Transcription Factor Family AT5G39660 33.959 6.42e-66 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pste9g00308 zf-Dof 5.4e-32 No_clan