Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00298 ATGTCTCTTCATCATTACCATTCCTCCAATCCCTTCGCCTCGTTGTCCTCCACTCACTCCGATTCCGATTCCGATTCCGATTCCGACTCAGTGAGTTGCTTCGTCACCGATCTCTTCGAGACTCCCTCTCGCCTCTGTTCCTGCGACGATACCGACATAAACCCCTTCTCCGGCGCGGTTTGCGACCTCCACCGCACGGAACAGGTGTTAGGGTTAGGGTTTGGTGTCGAAATTGATCTGCAAATTCAGAACGCTGGGGGTGGTAGTGGTAATAATAATAATAATAATCGTGATAGGGTTTTCAATTTTGCGGTGGGGGACGGTTCGGGTGGGCTTAGGGTTGTAGGGTTTGGTTCGGATTCGGATTTGAGTAGCGAGGAGGGTAGGGTTCGTGATGGTGTTGGGTTTGATGATTTTGATGTTCGATTGTGTTGGGATAGTCTCTGTTTGGAGGATCAGAGGACGCTGAATGAGGGGTTTGAATGGGAGGAGGTGGAGGAGAGGGTGAATGAGAGAGAGGATTTGGGGCTGGTGGTTGATGAGGTTGAAATTGAAGATGGTGATGATGGTAATTCGGAGGTGTCAGGGTTTACTAATGCTGGTGATGGCGAGGAAGAGGAGGAGGAGGAGGAAGAAGAGGAGGATGGCGGTGAAGAGGCGTTGAGGTATCTTGAATGGGAGATTCTCTTGGCTGTTAACAATTCAGAGAGGAATGTTAATGGTGGTGTGTTGTTGGAGCATGAGGGTACTGCTGTTGGTGGTGCTGATTTGTTGACAATTCAGGATGGTTATGTGTATGCTGCTGAGTATGATGTTTTATTTGGGCAGTTGCTTGAGAATGAGAGTGCCTTGAAGGGGAGCCCACCGGCTTCGAAGAGTGTTGTGGAGAGTCTCCCATTGGTGGAGTTGTCAAAGGAGGAGTTGTTGGATGGGAAGAATGTGGCATGTGCCATTTGCAAGGAGGAGATTTTGTTGGGGGAGAAGGTCAGGAGGCTGCCTTGCTCCCATTGTTATCATGGAGACTGCATTTTTCCCTGGTTGGGCATTCGCAACACCTGCCCTGTTTGTCGGTTTGAGCTGCCCACGGATGACCCGGACTATGAGCAGAGGAAGGTCCACAGGGCTGCTCATGATCTTTTGGAGCTCGCCACATCTCGGATGCAATTTTGA 1170 0.5017 MSLHHYHSSNPFASLSSTHSDSDSDSDSDSVSCFVTDLFETPSRLCSCDDTDINPFSGAVCDLHRTEQVLGLGFGVEIDLQIQNAGGGSGNNNNNNRDRVFNFAVGDGSGGLRVVGFGSDSDLSSEEGRVRDGVGFDDFDVRLCWDSLCLEDQRTLNEGFEWEEVEERVNEREDLGLVVDEVEIEDGDDGNSEVSGFTNAGDGEEEEEEEEEEEDGGEEALRYLEWEILLAVNNSERNVNGGVLLEHEGTAVGGADLLTIQDGYVYAAEYDVLFGQLLENESALKGSPPASKSVVESLPLVELSKEELLDGKNVACAICKEEILLGEKVRRLPCSHCYHGDCIFPWLGIRNTCPVCRFELPTDDPDYEQRKVHRAAHDLLELATSRMQF 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00298 389 ProSiteProfiles Zinc finger RING-type profile. 316 357 IPR001841 -
Pste9g00298 389 Pfam Ring finger domain 316 357 IPR001841 -
Pste9g00298 389 MobiDBLite consensus disorder prediction 1 26 - -
Pste9g00298 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 204 361 - -
Pste9g00298 389 FunFam E3 ubiquitin-protein ligase RING1-like 276 363 - -
Pste9g00298 389 SMART ring_2 316 356 IPR001841 -
Pste9g00298 389 SUPERFAMILY RING/U-box 299 364 - -
Pste9g00298 389 MobiDBLite consensus disorder prediction 183 218 - -
Pste9g00298 389 MobiDBLite consensus disorder prediction 200 218 - -
Pste9g00298 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 363 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00298 Pste-Chr9 1387054 1388223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00298 226 371 C3H Transcription Factor Family AT3G02340 48.428 7.84e-44 155