LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste9g00266	GAAAATATAATTATTTCTTCAAATAAAGTAATTCAGACGTGCCTTTAGTCATTGTTCTAAGAATGAAGGTGTCCATGTTACATTCTTTCCTTAAGCCTTACCTTTAGTTCTGATTTTCATCCATGAGTTTAATATTTAAAATTTTCAAATTTTGTTACCTGTGTTTCATGGGTTTAAATAATCTTTTATTTCCTCTCTGCAAAAAAAGGCATAAAATAAATTGAATCAATTACTATCTTGAAGTTCAATTGATGTCAGTTAGACTTAGATCTGGATGAGGTATTGAATTAACATAAAGTTGTACAAACTTTGTAACAGTGGGCCTGTGCAGCACTAGTCTTCTGCAAAATGCTTTCATTGTTTGAGTATCAAAAGAGATTAAAGAATGGTTCATCGAGCTGATTTAGTTATCATTGGTGTTTCCGTTGGTTTGGCCCTTGGAATTTTGATATCTTGCCTCATATTTTTCGGAATAAGGTGGTACAAGAAACATGCACATCTTAGACGATCTACAAATGAGTCTAGTGTAACAACTCTTCCAATACGTACAAATGGATTAGGAACAAGTGTTGACTTTAGTGCATCGCTTGATAGTTCTGTTGTCACATCAAGGTTCGAAAATCCTAAGAAAAATTCCCATTTCACTTGGTGGAATCATCAAAACAAAGATCGGTTTGCTTCAGTATCAGGTGTTCTAAAGTATTCATACAAAGAAATTCAGAAGGCCACACAAAATTTCACGACTACCTTGGGACAAGGATCATTTGGCACAGTTTATAAAGCGGCAATGCCTGCAGGGGAGGTTGTAGCAGTGAAGGTGCTTGCACCTGATTCCAGACAAGGGGAGAAAGAATTCCAAACAGAGGTATTTCTTCTAGGAAGACTGCATCATCGGAATCTTGTGAATTTGGTTGGATATTGTGTAGATAAAGGACAACGTATACTGGTTTATCAGTACATGAGTAATGGAAGTTTAGCAAATCTTTTGTATGGCGAAGAAAAGGTACTGAGTTGGGATGAAAGGCTGAAAATTGCTCTTGATATTTCACACGGAATAGAATATCTCCATGAAGGGGCAGTCCCACCTGTCATACACCGTGATTTAAAATCTGCCAACATATTGCTAGATCACTCAATGAGAGCTAAGGTTGCTGATTTTGGCCTCTCAAAGGAAGAGATCTTTGATGGCCGGAATTCTGGTCTCAAGGGCACATATGGTTATATGGATCCTGCATACATTTCCACAAGCAAGTTAACCACCAAGAGTGACATATACAGTTTTGGTATCATAGTTTTTGAGCTCATCACTGCCATCCACCCACATCAAAATTTGATGGAATATGTCAATCTTGCTGCAATGGATCATGATGGTGTAGATGAGATACTTGACAAGCAACTTGTGGGAAAATGCAATCTTGAAGAAGTGAGGCAGCTTGCTAAAATTGGACACAAATGCTTGCACAAATCACCAAGGAAACGCCCCTCTATAGGTGAGGTTTCACAGTTCATATCAAGAATAAAGCCAAGGCGACAGCGCCGTCTAACAGAAGATAACTTGTCATTTGCAAGCCATAACTTTTCTCGATCTGTGAGTCGATTAGAAGATCGACAGGTTGAGCTAAGTAGGATGCCATCCACAAACCTCACAGAAACTGTATGAACATAATTACTTATATATGGAAAAGTATTACAAAATATTGAAATCAAAGTTCCAATGTTGGCATTCCTAACTCGTAGAGTGGAGGGAAAATTCACCATATGAATCATGACTATTCTGATGGAGGAGAGAAGCACGAGTTCCTCCATGTCAGTTTGAAACAAGAGGACTACTTGTGTGTTTCGAACTGTGTTCAACAGAACTAGGATCCATCCCTTTTGTTTCTTCTATGTTTCCTGGTCTGAAAAGTGAGATTCATCGTTTTGAGTTCTTCAAACGGATATCCAAACAGAGCCTACCTTAGACACGTTTGTTATCAAACTAACTCACACATGGCACCCCATTTGCACAAAATCATTGTTCTTCATTCTTTCTCAGCCTTTTTACACAATAAATGCCTTTGCTCTGGTCAATTTAAAATACTTTGCCCCTTGTGATAGTTTAATTAGTAAAAGTTTGAGTGTAAATCCCTCAATGCAGTCTGCCTTATCTTTTTCCCTCTAGGCTTTCTTCAACTCCCTCTAAGAGGCTTTGAAAAACAGCTTCCAAACCTAACAACAATAGATATTGAATCAAGTACAAAGATTTGAAAAGGCACTTGGACTTGTTGCTTTATAAAGGAAACAAGAATCCAAATCAATATAAAAGTAGGATAAATGCAAATAAGAAAGACTTTGATAAC	2339	0.3741	MVHRADLVIIGVSVGLALGILISCLIFFGIRWYKKHAHLRRSTNESSVTTLPIRTNGLGTSVDFSASLDSSVVTSRFENPKKNSHFTWWNHQNKDRFASVSGVLKYSYKEIQKATQNFTTTLGQGSFGTVYKAAMPAGEVVAVKVLAPDSRQGEKEFQTEVFLLGRLHHRNLVNLVGYCVDKGQRILVYQYMSNGSLANLLYGEEKVLSWDERLKIALDISHGIEYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEEIFDGRNSGLKGTYGYMDPAYISTSKLTTKSDIYSFGIIVFELITAIHPHQNLMEYVNLAAMDHDGVDEILDKQLVGKCNLEEVRQLAKIGHKCLHKSPRKRPSIGEVSQFISRIKPRRQRRLTEDNLSFASHNFSRSVSRLEDRQVELSRMPSTNLTETV	424

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste9g00266	424	FunFam	Calcium/calmodulin-regulated receptor-like kinase 1	90	191	-	-
	Pste9g00266	424	SUPERFAMILY	Protein kinase-like (PK-like)	102	393	IPR011009	-
	Pste9g00266	424	ProSitePatterns	Protein kinases ATP-binding region signature.	122	144	IPR017441	GO:0005524
	Pste9g00266	424	Gene3D	Transferase(Phosphotransferase) domain 1	192	400	-	-
	Pste9g00266	424	ProSiteProfiles	Protein kinase domain profile.	116	375	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste9g00266	424	Pfam	Protein kinase domain	120	372	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste9g00266	424	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	24	-	-
	Pste9g00266	424	CDD	STKc_IRAK	122	378	-	-
	Pste9g00266	424	SMART	serkin_6	116	375	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste9g00266	424	FunFam	Calcium/calmodulin-regulated receptor-like kinase 2	192	401	-	-
	Pste9g00266	424	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	7	383	-	-
	Pste9g00266	424	Gene3D	Phosphorylase Kinase; domain 1	81	191	-	-
	Pste9g00266	424	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	235	247	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste9g00266	Pste-Chr9	1211538	1216611	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste9g00266	86	378	Receptor kinase-like Gene Family	AT1G79620	42.857	2.41e-71	240

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-2	Pste9g00266		Pkinase	1e-49	CL0016