Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00245 GAAGCTATGGTGAGGCCTCCTTGCTGTGAAAAAGTGGGAATCAAGAAGGGTCCATGGACTCCAGAGGAAGATATCATTCTTGTCTCTTACATCCAAGAACATGGCCCACGAAATTGGAGATCAGTGCCAACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGACTTAGATGGACTAACTACCTCAGGCCAGGAATCAAAAGAGGGAACTTCACTAGTAATGAGGAAGGCATGATAATTCACTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCTTACCTTCCACAAAGAACAGACAATGATATAAAGAATTATTGGAACACTCATCTAAAGAAAAAATTGAAGAATTTTCAAGCAGTGGCTTCAAACTCAACATCAACATCTGTCTATGAATCCATGATTTCTAGTGACAGAAGAAATTTAGAGATGAATAGCAACCATGCCTCATCCTCCACCTATGCCTCAAGCACAGAGAACATTTCAAGACTCTTAGAAGGGTGGATGAGATCTTCTCCATCATCCAAAGAAACCCAAAGCAAAGATCACCAAAGCAATGAAAATTTTGAAAACAATATGCTATTGAAGGCTGCATCTGCTTTGCACATAGAGTGCTTGCAAACCAAAGATGAGAAAGAGGGTGGACACATAGTTCCCTATGAAGAATTTGATTCTATTTTGTGTTTTGAAAACCTAAAGAGTGATGAAGATGGTGGTGGTGAAAAGGGTCATGATATTGAAGAGAGAAATAGGGAAAGAGGTGAGAACAATAATAATAATGCTCCTCCATTGTCATTTCTTGAGAAGTGGTTGTTGGATGAAAATGTTGGTCAAGTAGAGGATGAGATGATGGAAGAATTGTCATCTAGTCCTATGTTT 888 0.3975 MVRPPCCEKVGIKKGPWTPEEDIILVSYIQEHGPRNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTSNEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKNFQAVASNSTSTSVYESMISSDRRNLEMNSNHASSSTYASSTENISRLLEGWMRSSPSSKETQSKDHQSNENFENNMLLKAASALHIECLQTKDEKEGGHIVPYEEFDSILCFENLKSDEDGGGEKGHDIEERNRERGENNNNNAPPLSFLEKWLLDENVGQVEDEMMEELSSSPMF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00245 294 SMART sant 13 63 IPR001005 -
Pste9g00245 294 SMART sant 66 114 IPR001005 -
Pste9g00245 294 CDD SANT 69 112 IPR001005 -
Pste9g00245 294 Gene3D - 68 142 - -
Pste9g00245 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pste9g00245 294 CDD SANT 16 61 IPR001005 -
Pste9g00245 294 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pste9g00245 294 Gene3D - 13 66 - -
Pste9g00245 294 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pste9g00245 294 FunFam MYB-related transcription factor 13 66 - -
Pste9g00245 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pste9g00245 294 MobiDBLite consensus disorder prediction 235 266 - -
Pste9g00245 294 MobiDBLite consensus disorder prediction 235 256 - -
Pste9g00245 294 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pste9g00245 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 194 - -
Pste9g00245 294 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pste9g00245 294 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00245 Pste-Chr9 1097444 1098852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00245 1 119 MYB Transcription Factor Family AT5G62470 87.395 1.44e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste9g00245 Myb_DNA-binding 3.1e-15 CL0123