Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00239 GTGTCTTTTAATTTCCCAGTTTCATAGCAATTATCGCCAAAAAGTCCAAAATTTCCACTCCTATCTCTATGTTTATGACATCCCAAACATCTACCTTCGCCACCCACTTTCTCAGTTCCAGGTGAGCAAGAGAATAAGTGATTGTCCATATTACAGGGTTAAGAGAACTGAAGAGGGAGGGTACTAGTTTGTGGGGGCTGTGACACTTCTGCAAGCTTAGAATCCTCTCTCCTATTTTTTATTTAATCAAAACAGTTAGTGTGGCGCTGCTGGACGCTCCTTTTCTCGAAGCCTGCAAGTAACACCTCTATTTTTTGGTGATCAGTGGAAGCGTGAGAAAATCTTAAGCTGAAGAGAGTTTGGGAAGCAGGAACAATGGGTTCTGTTTGTTGTTGTTTAAGTTTTGATGATTTTGAAGATTATGTAAATCCAAATAGTTCTGTATATAGGAACTGCGTGTGTCTCAGTTGCTTGATACAGAACCTTTTGAGTGTGTATGCATCAATATTTCGTAGAGGGGATGGACATTCAATTCCTTCATCTATTCAGGGCTCAGCATCTATGAATTCTGCAGCATCGCTTGATAATTCCCTATCTGACATGTACCGATCTCCCCCAAGACCATTACCATATGATGTAGAACCCAGATATCTCCGCTCACAACGTGAGGGACTAGTTTCAAGGCGCGAGAAGGGTTCAAGTCATTCCAATGAGGAAACAGAACCTCTAAGAAGTGATGTTGATGTGGATCCGGAGTCTTTAAATTCTGGAGACAAATGGAATGAAAGTGCATGTGAAGCTGGATCCAAGGAATACCGTTCTAAGTCCTCACTAAGACTTCAATCAACAAAGTATTCAACTGGAGTTGGCCTTGTCTATGCATCATCAGAGGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACCAAAGAGAATCCAAAGATAATGACAAAATGCTCTCATCATTTTCACCTTGGTTGCATTTATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGGAAAGGTGATGGTATTCGATGAAACGGCGTTCACTTGATTGCAAGGTTTTTGTCGTGGATGAAATCAGCAGCTGTGGCATGGAAGAATATAAGTATAGACATTGTGAATACAACAGATTAAGTGCTTGTCATGTATAGTATGAAAAGTTTTCTTAACACCATTGTTGTGAGTCCATTCTAATCCCACTTGTTTGTCATGTTTAAATTCTCAACTTGTCCAAAACTGTGAAGAAAGAAAGCATATGCAAGTTGAGCTGGAATGATGGCATCATCATCTTAACCTCTATTGATTGTATGTTTTGGTGATACCAAGTCAATGAGTTTTTTAAGTAAATGGAAAAAAATAAATGGAACGTCCTATGTGAGAACATGAGATGTAACAATAGTGACGGGGTGTATCAAAGTGATTGATGACAACATGTATAGTATTAGTTTATTTCAATAAACTGTAAACTTATTTTAGTAAACTTTATAGCTAAG 1507 0.3895 MGSVCCCLSFDDFEDYVNPNSSVYRNCVCLSCLIQNLLSVYASIFRRGDGHSIPSSIQGSASMNSAASLDNSLSDMYRSPPRPLPYDVEPRYLRSQREGLVSRREKGSSHSNEETEPLRSDVDVDPESLNSGDKWNESACEAGSKEYRSKSSLRLQSTKYSTGVGLVYASSEEEDVCPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETAFT 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00239 229 CDD RING-H2_AIRP1-like 173 221 - -
Pste9g00239 229 MobiDBLite consensus disorder prediction 98 137 - -
Pste9g00239 229 MobiDBLite consensus disorder prediction 98 130 - -
Pste9g00239 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 224 IPR013083 -
Pste9g00239 229 SMART ring_2 177 217 IPR001841 -
Pste9g00239 229 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Pste9g00239 229 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 57 225 - -
Pste9g00239 229 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Pste9g00239 229 SUPERFAMILY RING/U-box 172 223 - -
Pste9g00239 229 MobiDBLite consensus disorder prediction 72 91 - -
Pste9g00239 229 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00239 Pste-Chr9 1022535 1028707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00239 1 226 C3H Transcription Factor Family AT5G15790 60.606 2.34e-94 274