Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00233 ATGCACATTAAATTAGAGAAACCCCTTCTCATTAGTAGTTTTACCACCATTGATGGTCGAGGTGTTAATGTTGACATTGCTAATAATGCATGTCTAATGATATCTAAGGCCACCAACATAATCATTCATAGCATTCGAGTTCATCATTGCAAGCCTCAAGCTCCTGGGCTTGTGATGGGACCCAAAGGAAAGGTGGTTCCTTTAGGCCACATGGACGGGGATGCAATTCGATTGGTTACTGCTTCAAAAATTTGGATTGATCATAATACACTTTTTGATTGCCAAGATGGTCTGCTTGATGTAACACGGGGTTCCACTAATGTGACTATCTCAAATAACTGGTTTAGAAACCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGATATGTGAGAGACCAAAACATGAAAGTTACTGTTGTGTACAACCACTTTGGACCTAATTGCAATCAACGTATGCCAAGGATTCGCCATGGATATGCACATGTAGTGAACAATCTTTATCAGGGATGGTTACAATATGCCATTGGTGGAAGCATGCAACCTAGTCTCAAAAGTGAAGCTAACCTTTTTATAGCACCAACAACAGGAAGTAAAGAGGTAATCAATTTTAGAGATTCCATTTCGTCAATTACTTAA 639 0.3944 MHIKLEKPLLISSFTTIDGRGVNVDIANNACLMISKATNIIIHSIRVHHCKPQAPGLVMGPKGKVVPLGHMDGDAIRLVTASKIWIDHNTLFDCQDGLLDVTRGSTNVTISNNWFRNQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVVNNLYQGWLQYAIGGSMQPSLKSEANLFIAPTTGSKEVINFRDSISSIT 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00233 212 PRINTS Pollen allergen Amb family signature 174 193 IPR018082 -
Pste9g00233 212 PRINTS Pollen allergen Amb family signature 152 171 IPR018082 -
Pste9g00233 212 PRINTS Pollen allergen Amb family signature 72 93 IPR018082 -
Pste9g00233 212 PRINTS Pollen allergen Amb family signature 8 24 IPR018082 -
Pste9g00233 212 PANTHER PECTATE LYASE 18-RELATED 1 203 IPR045032 GO:0030570
Pste9g00233 212 Gene3D - 1 210 IPR012334 -
Pste9g00233 212 SMART amb_all 1 197 IPR002022 -
Pste9g00233 212 SUPERFAMILY Pectin lyase-like 1 198 IPR011050 -
Pste9g00233 212 Pfam Pectate lyase 11 191 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00233 Pste-Chr9 1000594 1001485 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00233 1 210 Polysaccharide Lyase AT5G09280 70.000 5.69e-117 333