Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00230 ATGACTTGTTCCATCCCTTCAAGCTTGCTTTGTGCTATTGTGATTATTGTCTGTTTCAATTCATCCCTTAGTTTTGCTATGCAATCCAAGATAAATGGCTTGAAAATGAATGCTATTGATCGATGTTGGAGACCAAATCCTAAGTGGAGAACACATCGGTCCCAATTGGCAGCATGTTCTGTGGGATATGTTGGTAAGATGACAAACAACATTGGTAAAGATCTTATTCATTATACAGTTACTGACCCTAGTGATGATCCTATAAACCCTAAACTCGGAACTTTGAGATATGGAGCTTCTGTGATTCAAGGTAAAGTGTGGATCACATTCCAAAAAGATATGCACATTAAATTAGAGAAACCCCTTCTCATTAGTAGTTTTACCACCATTGATGGTCGAGGTGTTAATGTTGACATTGCTAATAATGCATGCCTAATGATATTTAAGGCCACCAACATAATCATTCATAGTATTCGAGTTCATCATTGCAAGCCTCAAGCTCCTGGGCTTGTGATGGGACCCAAAGGAAAGGTGGTTCCTTTAGGCCACGTGGACGGGGATGCAATTCGATTGGTTACTGCTTCAAAAATTTGGATTGATCATAATACACTTTTTGATTGTCAAGATGGTCTGCTTGATGTAACACGAGGTTCCACTAATGTGACTATCTCAAATAACTGGTTTAGAAACCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGATATGTTAGAGACCAAAACATGAAAGTTACCGTTGTGTACAACCACTTTGGACCTAATTGCAATCAACGTATGCCAAGGATTCGCCATGGATATGCACATGTAGTGAACAATCTTTATCAGGGATGGTTACAATATGCCATTGGTGGAAGCATGCAACCTAGTCTCAAAAGTGAAGCTAACCTTTTCATAGCACCAACAACAGGAAGTAAAGAGGTAATGAATTTTAGAGATTCCATTTTATCAATTACTTAA 978 0.3865 MTCSIPSSLLCAIVIIVCFNSSLSFAMQSKINGLKMNAIDRCWRPNPKWRTHRSQLAACSVGYVGKMTNNIGKDLIHYTVTDPSDDPINPKLGTLRYGASVIQGKVWITFQKDMHIKLEKPLLISSFTTIDGRGVNVDIANNACLMIFKATNIIIHSIRVHHCKPQAPGLVMGPKGKVVPLGHVDGDAIRLVTASKIWIDHNTLFDCQDGLLDVTRGSTNVTISNNWFRNQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVVNNLYQGWLQYAIGGSMQPSLKSEANLFIAPTTGSKEVMNFRDSILSIT 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00230 325 PRINTS Pollen allergen Amb family signature 185 206 IPR018082 -
Pste9g00230 325 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Pste9g00230 325 PRINTS Pollen allergen Amb family signature 84 109 IPR018082 -
Pste9g00230 325 PRINTS Pollen allergen Amb family signature 265 284 IPR018082 -
Pste9g00230 325 PRINTS Pollen allergen Amb family signature 121 137 IPR018082 -
Pste9g00230 325 SMART amb_all 113 310 IPR002022 -
Pste9g00230 325 Pfam Pectate lyase 123 304 IPR002022 -
Pste9g00230 325 Gene3D - 36 321 IPR012334 -
Pste9g00230 325 SUPERFAMILY Pectin lyase-like 31 314 IPR011050 -
Pste9g00230 325 PANTHER PECTATE LYASE 18-RELATED 34 316 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00230 Pste-Chr9 973620 974847 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00230 67 316 Polysaccharide Lyase AT5G09280 70.400 2.60e-142 402