Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00229 TTTCTCTCTCTCTAATATGCCTACAACATAATGGACAAAAAACCATGCAACTCATCTCAAGATCCTGAAGTGAGAAAGGGACCATGGACCATGGAAGAAGACTTGGTCTTGATCAATTATATTGCAAATCACGGTGAAGGTGTTTGGAACTCTTTAGCCAAAGCTTCAGGTCTCAAACGTACGGGAAAGAGCTGTCGACTCCGTTGGCTAAACTATCTTCGTCCTGATGTTAGAAGAGGAAATATTACACCTGAGGAACAACTTTTGATCATAGAACTTCATGCAAAGTGGGGTAATAGGTGGTCCAAAATTGCAAAGCATCTTCCGGGAAGAACTGACAATGAGATTAAGAACTTCTGGAGAACTAGGATCCAAAAGCACATTAAGCAAGCTGAAACTTCACAAAAACATGGTAATTCAGAGAATAATGATCATCATCAAGCAAGCACTAGCACTAGCAAAGTCTCCAACATGGCACAATCCATTGAGACTTTCTCTCCATCCTCATACCATGGAACTATGCAGCCATTAATTCCAGCTCATCAATTCCCAGCAATCACTGATCAATCAAGTTGTTGTACCAATGATAACAACAACTATTGGAGCATGGAGGATATCTGGTCTATGCAATTACTCAATGGAGATTAAACCTACTTGTATGCTTATACAAAATCATATGTATAATAATGATACATAAACCTAAGTTTTTATAATTAAGTGTGTTCAGGCTTAATAACATTAAGTCTATTCATACCAGTAGTTAAAGTTTGGTGTTGTGCCATACATGATGTGATTTTAAAATTCATTCAGTTACTCATGACTTGAAATATATTTATATATAGGAACTTAAATACTACATGTGC 863 0.3685 MDKKPCNSSQDPEVRKGPWTMEEDLVLINYIANHGEGVWNSLAKASGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIIELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQAETSQKHGNSENNDHHQASTSTSKVSNMAQSIETFSPSSYHGTMQPLIPAHQFPAITDQSSCCTNDNNNYWSMEDIWSMQLLNGD 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00229 205 Gene3D - 73 146 - -
Pste9g00229 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Pste9g00229 205 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 151 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pste9g00229 205 FunFam Myb-related protein 305 73 143 - -
Pste9g00229 205 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Pste9g00229 205 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Pste9g00229 205 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pste9g00229 205 CDD SANT 73 112 IPR001005 -
Pste9g00229 205 SMART sant 15 65 IPR001005 -
Pste9g00229 205 SMART sant 68 116 IPR001005 -
Pste9g00229 205 MobiDBLite consensus disorder prediction 119 147 - -
Pste9g00229 205 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pste9g00229 205 CDD SANT 18 63 IPR001005 -
Pste9g00229 205 Gene3D - 16 68 - -
Pste9g00229 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pste9g00229 205 MobiDBLite consensus disorder prediction 119 133 - -
Pste9g00229 205 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Pste9g00229 205 FunFam Myb transcription factor 16 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00229 Pste-Chr9 972394 975733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00229 10 205 MYB Transcription Factor Family AT3G01530 60.199 2.74e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste9g00229 Myb_DNA-binding 9.3e-14 CL0123