Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00226 GTTCCAAGTTTTGAACCCCAGAACTCTCTTGTTTTTCACAAATTTGGCTGCACTTGGGTACTGACCCAGAAAAGAAGGTTCAACAGTAGAAATATGGGGAGGGGAAGAGTGGAACTGAAAAGGATAGAGAACAAGATAAACAGGCAAGTAACATTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTCATCATCTTTTCCACCCGTGGCAAGCTTTATGAATTTTGTAGCAGTTCAAGCATGCTCAAAACACTTGAAAGGTACCAAAAATGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGCCAAAGAGCTCGAGCAGAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACCCAAAGAAACCTTCTAGGTGAAGACTTGGGCCCATTAAATACCAAAGAACTGGAGCAGCTTGAGAGGCAACTAGATTCATCTCTGAAGCAAGTGAGGTCCACAAAGACTCAATTCATGCTGGACCAGTTAGGTGATCTTCAAAATAAGGAGCAGATGTTGGTAGAAGCAAACAGAGCTCTGACCATGAAGCTAGAAGAAATCAACTCAAGGAACCAGTATAGGCAAACATGGGAAGCTGGTGAACAAAGTATGCAATATGATACACAAAATGCTCACTCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAATCCCACATTGCAGATAGGTCCTGATTACAGGTACAACCCTGAAGCCTCAGATCAGCTAACTACTACAACTCAAAGTCAACAAGTGAATGGGTTTATTCCTGGATGGATGCTTTGATAAGCTCAGTGTTTAGCTGGCTACATAAATAAAATTAGCAAACACCTAAGGCCAAAGTCAAATTAATGCCTCTTGGTATTGGAAATTAATGTGTAAATGCTGCTTTTGCTTCTGTTATTTGTTTTGGCATATAAACAGCAGTGACTGACTTAAAACTATTAAAACTTCAGCCATAGACAAATGACATGTAAGAGGGTCATAGTATTTTGAATGTCTTTTAAGGAGAACTTTATCTGACTGGATGACCATTTAATGTCACTTTTTTTTCCTCTTTTTGCACTCACTCACTAATCTGACTGCTTTAAGATTTTTTTATTTAAATTTCTTGCATATATTAGTGAAGGA 1185 0.4008 VPSFEPQNSLVFHKFGCTWVLTQKRRFNSRNMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELEQSSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLGDLQNKEQMLVEANRALTMKLEEINSRNQYRQTWEAGEQSMQYDTQNAHSQGFFQPLECNPTLQIGPDYRYNPEASDQLTTTTQSQQVNGFIPGWML 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00226 279 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 41 88 IPR002100 GO:0003677|GO:0046983
Pste9g00226 279 SMART madsneu2 32 91 IPR002100 GO:0003677|GO:0046983
Pste9g00226 279 SUPERFAMILY SRF-like 33 107 IPR036879 GO:0003677|GO:0046983
Pste9g00226 279 PANTHER SERUM RESPONSE FACTOR HOMOLOG 34 217 - -
Pste9g00226 279 FunFam MADS-box transcription factor 1 44 119 - -
Pste9g00226 279 Coils Coil 156 176 - -
Pste9g00226 279 ProSiteProfiles MADS-box domain profile. 32 92 IPR002100 GO:0003677|GO:0046983
Pste9g00226 279 Gene3D - 44 115 IPR036879 GO:0003677|GO:0046983
Pste9g00226 279 ProSiteProfiles K-box domain profile. 119 209 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste9g00226 279 Pfam K-box region 119 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste9g00226 279 PRINTS MADS domain signature 54 69 IPR002100 GO:0003677|GO:0046983
Pste9g00226 279 PRINTS MADS domain signature 34 54 IPR002100 GO:0003677|GO:0046983
Pste9g00226 279 PRINTS MADS domain signature 69 90 IPR002100 GO:0003677|GO:0046983
Pste9g00226 279 CDD MADS_MEF2_like 33 107 IPR033896 GO:0000977|GO:0045944
Pste9g00226 279 ProSitePatterns MADS-box domain signature. 34 88 IPR002100 GO:0003677|GO:0046983
Pste9g00226 279 Coils Coil 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00226 Pste-Chr9 960671 966951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00226 32 279 MADS-box Gene Family AT5G15800 73.764 1.86e-122 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste9g00226 K-box 2e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste9g00226 9 960671 966951 Pste5g00591 5 3808266 3818829 PCT