Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00202 GTTGCATTCATCAAGAACATATATCCTTCACGATGGCTTGTCTCATCCCTCTTTATTTGTTTTGGGCTATTATGATTATTGTCTTCTTCAATTCAAACCTTAGTTTTGCAAAACAATCCAAGATATTTGGCTTGAAAATGAATGTTATTGATCGATGTTGGAGACCAAATCCTGGATGGAGGACATATAGGTCTCAATTGGCCACATGTTCTGTGGGCTATGCTGGCAAGATGGCAAACAACATTGGCAAAGACCTTATTCATTACACAGTTACTGACCCTAGTGATGATCCTGTAAACCCTAAAATTGGCACCTTAAGGTATGGAGCTTCTATGATTCAAGGTAAAGTGTGGATCACATTCCAAAAAGATATGAGCATTAAACTAGAGAAATCCCTTCTCATTAGTAGTTTTACTACCATTGATGGTCGAGGTGTTAATGTCAACATTGCTAATAATGCATGCTTAATGATATTTAAGGTAATTCATTTAGGACAAGTGGATGGGGATGCAATTAGATTGGTTACTGCTTCAAAAATTTGGATTGATCATAATACTCTTTATGATTGCCAAGATGGTTTACTTGATGTTACACGAGGTTCCACAAATAAACCAAGACAAGGTTATGCTTCTGGGCATGATGATGGATATGTAAGAGACCAAAACATGAAAGTTACTATTGTGTACAACCATTTTGGACCTAATTGCAATCAACGCATGCCAAGGATTCGACATGGATATGCACATGTAGCCAACAATCTTTACCAAGGATGGTTGCAATATGCCATTGGTGGAAGCATGAAACCTAGTCTCAAAAGTGAAGCTAACCTTTTCATAGCACCAAGAACAGGGAGTAAAGAGGTAACATGGAGAAAAAGCACTGATAAAAATGGAGATAGATGGGAATTTCATTCAATAGGAGATATTTTTGAAAATGGAGCTTCATTTGCAATAACAAAAGGAGGACATGTGTCGAAACCAAATTATAATAAGGAACAAAGTTTTAAAGTAGTTGATGCTAAATCTGTAAGATCTTTGACACGATCATCAGGCGTGTTACATTGCAAT 1067 0.3674 MACLIPLYLFWAIMIIVFFNSNLSFAKQSKIFGLKMNVIDRCWRPNPGWRTYRSQLATCSVGYAGKMANNIGKDLIHYTVTDPSDDPVNPKIGTLRYGASMIQGKVWITFQKDMSIKLEKSLLISSFTTIDGRGVNVNIANNACLMIFKVIHLGQVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTNKPRQGYASGHDDGYVRDQNMKVTIVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWLQYAIGGSMKPSLKSEANLFIAPRTGSKEVTWRKSTDKNGDRWEFHSIGDIFENGASFAITKGGHVSKPNYNKEQSFKVVDAKSVRSLTRSSGVLHCN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00202 345 Pfam Pectate lyase 148 267 IPR002022 -
Pste9g00202 345 SUPERFAMILY Pectin lyase-like 33 344 IPR011050 -
Pste9g00202 345 Gene3D - 36 343 IPR012334 -
Pste9g00202 345 PANTHER PECTATE LYASE 18-RELATED 151 345 IPR045032 GO:0030570
Pste9g00202 345 SMART amb_all 113 273 IPR002022 -
Pste9g00202 345 PRINTS Pollen allergen Amb family signature 84 109 IPR018082 -
Pste9g00202 345 PRINTS Pollen allergen Amb family signature 121 137 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00202 Pste-Chr9 821228 822805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00202 67 277 Polysaccharide Lyase AT5G09280 58.871 2.41e-104 306