Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00179 ATGGCATCTTCTAGCTACTCGAATTCTCCATGTGCTGCCTGCAAGTTTTTGAGAAGGAAGTGCATGCCGGATTGCATATTTGCGCCATATTTCCCACCAGAAGAGCCTCAGAAGTTTGCGAATGTTCACAAGATATTTGGTGCAAGCAACGTGAGCAAACTGCTCCACGAGGTGCAACCCCATCAGAGAGAGGACGCTGTGAACTCTCTGGCATATGAAGCCGAAGCAAGGATCAAAGATCCAGTGTATGGTTGTGTTGGGGCCATTTCAGTGCTCCAAAGACAAGTCATCAGGCTCCAAAAGGAACTCGATGCCACAAATGCTGATTTGATCCGCTATAGTTGCAATGAAATTCCAAATACTCATCATGGAGGAGCTGCTTCCTCCCTTGGTAACTCTCATGCTTTCTATTATCCTTCTACTAATTGGAACAATGATCATTGTGGAAATCGCTACCCCTCAGGCGATATATAA 474 0.4557 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLHEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYSCNEIPNTHHGGAASSLGNSHAFYYPSTNWNNDHCGNRYPSGDI 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00179 157 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Pste9g00179 157 Coils Coil 89 109 - -
Pste9g00179 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 123 - -
Pste9g00179 157 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00179 Pste-Chr9 712071 712544 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00179 4 114 AS2 family AT3G27650 85.586 5.74e-71 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pste9g00179 LOB 1.1e-42 No_clan