Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00123 CAGCCACTCACTCCCAAATCTCAATAAATAAAATAAAAAAAATAAAAAAAGGGTTTTACAATACATCAAGTAAAGATTCAAGAAGCAATATCCAGCTAGGGTTTCTCTTTCTTTTTCTGTTTCACATTCTCTTCTGAATTCGCAAGTCATGGAATCACCCGGTAACGACCATGTGGTGGGTGCCACAGAACCCAACGACGTCGTTACGCCCTTTTCCCACAGAGAAGAACCCCACAATTCCCAACCGCTCACCGGCGATGGTGCCAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCCCAATTTATCAAGCACTTTGGTAAATATGGTGAGATCACGGATTCGGTCATCATGAAGGACAGGAAAACGGGACAGCCTCGTGGATTTGGGTTCATAACGTATGCGGATCCCTCGGTGGTTGATAAAGTCATTGAGGACCCTCATATCATCAATGGCAAACAAGTATGGCTTGATTTTCTTGATTTCTTGGCTAAGGATGTCATGTTACCCGTTGAGATTAAGCGGACGATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTCTTTACACGCTATGGCGAAGTCAAAGATCACCAAATAATGCGGGATCACTCCACCAATCGATCTCGTGGCTTTGGGTTTATAACATTTGACTCTGAAGAAGCAGTTGATGATCTCCTATCCATGGGGAACAAAATTGAATTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAGCTCAGCACCTCCATCCAAGCGCTATAATGACTCGAGGTCGTCATACAGCAGTGGTGGATATGGAGATGCCTATGATGGATTTGGTGGCAGTTTTGGAGTTGGGGGTGGTTATAGGTCAGGCGGCACTTATGGTGGTGGTAGGGGTGGTACTTACAGTGGCTATGGAAGTGAATTTGGTGGGTATGGAGGATATGCTGGTGCAATGGGGCCGTATAGAGGAGATCCCTCCCTTGGGTATGCTGGTCGTTATGGTGGTAACTTTAGTAGGGGGTATGATCTTGGTGGGTATGGTGGACCTAGTGAAAATTATGGGGCATATGGTGGCGGTTCTTCTGGTGGTGGCGGCGGCAGCAGTGCCTATCAAAGTGGCTATGATGGCAGCCTAGGTGGTGGATATGGAGGGGCTAGTGGAGGCCCCTTCTATGGGAGTAGTAGAGGAGGATATGGTGCTGGTCGATATCATCCTTATGGAAGATAAGATTGGAAATTGGAAACCTGGCATTTATAGTCTAGGACTAATATGTCTAGCATGAAAGAAAGTTTTTAGTGTGTTTGGTTCATCAGTTAGATTACTTAATCTCTTTTTTAAAAAATGAATTGTCAAAGGTTACTTTCATTTATCAGCACACCCATTTCATGAAAGTCCAAGCAAATTACTTTACTCTCCCCGTTCTGGAGTCTGTTTATTGATTTATTATGAGCTGCAAATTGTGCAGATGATTGTATTTTCTATCTTGTTCATTGTTGTTTGAACTGCTTCTTACTACCATTGTTTTTTGTTTATTTTTATATAATTG 1628 0.4312 MESPGNDHVVGATEPNDVVTPFSHREEPHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDPHIINGKQVWLDFLDFLAKDVMLPVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIEFAGAQVEIKKAEPKKPSSAPPSKRYNDSRSSYSSGGYGDAYDGFGGSFGVGGGYRSGGTYGGGRGGTYSGYGSEFGGYGGYAGAMGPYRGDPSLGYAGRYGGNFSRGYDLGGYGGPSENYGAYGGGSSGGGGGSSAYQSGYDGSLGGGYGGASGGPFYGSSRGGYGAGRYHPYGR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00123 386 SUPERFAMILY RNA-binding domain, RBD 32 115 IPR035979 GO:0003676
Pste9g00123 386 MobiDBLite consensus disorder prediction 367 386 - -
Pste9g00123 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 110 IPR000504 GO:0003723
Pste9g00123 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 216 IPR000504 GO:0003723
Pste9g00123 386 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 31 386 - -
Pste9g00123 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 132 IPR000504 GO:0003723
Pste9g00123 386 SMART rrm1_1 43 114 IPR000504 GO:0003723
Pste9g00123 386 SMART rrm1_1 147 220 IPR000504 GO:0003723
Pste9g00123 386 Gene3D - 42 135 IPR012677 -
Pste9g00123 386 MobiDBLite consensus disorder prediction 1 39 - -
Pste9g00123 386 SUPERFAMILY RNA-binding domain, RBD 138 254 IPR035979 GO:0003676
Pste9g00123 386 MobiDBLite consensus disorder prediction 220 242 - -
Pste9g00123 386 Gene3D - 146 228 IPR012677 -
Pste9g00123 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 224 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00123 Pste-Chr9 534047 537359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00123 19 246 Eukaryotic Initiation Factors Gene Family AT2G23350 24.464 4.78e-15 75.1