Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste9g00079 GTTCCCACATCGAATCAGAATCCGAGTCCCATGTCCCTTCTCTTATCCATGTCTTGTGCAAGTGCAAGGTTGTTGTGTCGCTGTTACAGATCTTCTTCTTCTTCTCCTTCTTTCCCTTTCCCTTTCTCTTTCTCCCGTCGGAGGCTCCTCTCCACCACTCCGACTCCATACCCTCTCCAATACGAACTCATCATCAACCGTCCCTCTCGGCGCCCACCACCCGTTCGACCCATTGACTCCAATGACTCCACTCCCCAACCCCAACCCAAACTGGACAAGGCCCAGAGAAAGTACTACATCAAGCGCAGGAAGAGGATGTACGGCTCCGACTCCGACCAAGACAACAACGCCCCACGCCATGATGATAGCTTGGTGGAGTTGAAGCCCCAAGTCGTCGACTTTCCCACCCTTCACAAGAGGGAGGAGGAGCTCTACTTCTACGACGCCTTTACCTATCCCTGGGAGAAGGACAAGCATTACAAGATGGTTTATCAGTTGGAGAAAAAGTACTTTCCCGATCAATGCCTTGACAACGCCTTTCTCCAACAGGGACACTCAAATCCAAATCCAAATCCAAATCCAAATGCTCTTGGCGATGACAACATGGTGTTTTTTCAGGAGGCAAACCAAAAGGGTGGAAGCTCAAGTACACAACTTAAGGAGAAGAAGGTTCAAGAGTTCTTCAAGGATCTCAAGAAGGTTCCTGATAATAACAAGGATGTTCAACTTCCACACCCTTTTCTTTCGTCAAGAAGGACTGGTCTTCCTCCTGTCTGGGATACTCCACATGGCACTGTGCTTTTGGTCAACAAACCAAAAGGTTGGACTTCATTCACGGTTTGTGGAAAGCTGCGTCGCCTTGTCAAAGTGAAAAAGGTAGGTCATGCTGGGACTCTTGATCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGTAAAGCAACAAAACTAGTAGACAGATATCAAGGGATGATTAAGGGTTATAGTGGAGTTTTCCGCTTGGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAACGTGAGCCATGGGAGCACATCAAAGATGAGGATATAAAGAGAAATGCTTTGTCCTTTTCTGGGGAGATTTGGCAAGTTCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGTGAAAAGATGTATGAGAAAGCGAGGAGAGGAGAAAGCATTGAACTTTCACCTAGACGGATTTCAATTTTCCTGTTCGACATAGAGCGTAGCTTGGATGACAGACAAAATTTGATTTTTAGAGTGACTTGTTCCAAAGGGACATATATTAGATCACTTTGTGCTGATTTTGGGAAGGCTCTTGGAAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATTGGACAATATTCAGCAGATGATGCATGGGACTTTCAAGAGCTGGAAGAGGCTATCACCAAAAACTATCTCTAACTTCTCTGCTCTTTTGCCTCCCATGATAATGGGAATGGGAGCCGTGACATGCACTACTCTGTTTTTGGGTAAAAACATGCAAATCGGTTTAGGAATTGTTTGGTTTGAGAAAATAATTTTGTTTTCATTTTTAGTTACAAATCTTATTTTCATTTTGTTTTCTATTTTAGAGTATTTGCATCAGAAGCAGTAAATACGAAAAATGGAAACAAGAAACAATAAAAAATGTTTCTTATTGTTTTCATTTTTTTTTCTATGCAAACTTTTGAAAAAAGGAAGCATACTGATATTTTTGTAATTAAAAGTAAAGATAAGAAAAGTTTTCTCAAACATGTGGCCCTTTGCCCAAACTTTTGTGTGTGTGTGTATATATTAATTTTTAGATCTCATGCTCCACCTTATTTTATTTTTATGAAGTTATGATATGTGAGGCATCACCGTAGTGTAAAGTCATCCCAACTATGTGGCTTGCTTCATGCATGGCTTGTCAGGTATATAAAAATGAGAATTGCTCAGTAAAAATTTGTTATTTATTGTATGAAGACATTAATGTTGGAAAGCAAAAATCTAGAGATGTGGTTTTGTAGACGAAGTTGCATGTCTATATATTAAGAGTATTACAATTATTATATTAAGTAATTC 2094 0.4107 VPTSNQNPSPMSLLLSMSCASARLLCRCYRSSSSSPSFPFPFSFSRRRLLSTTPTPYPLQYELIINRPSRRPPPVRPIDSNDSTPQPQPKLDKAQRKYYIKRRKRMYGSDSDQDNNAPRHDDSLVELKPQVVDFPTLHKREEELYFYDAFTYPWEKDKHYKMVYQLEKKYFPDQCLDNAFLQQGHSNPNPNPNPNALGDDNMVFFQEANQKGGSSSTQLKEKKVQEFFKDLKKVPDNNKDVQLPHPFLSSRRTGLPPVWDTPHGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRNALSFSGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFLFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWDFQELEEAITKNYL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste9g00079 483 FunFam tRNA pseudouridine synthase B 260 482 - -
Pste9g00079 483 Pfam tRNA pseudouridylate synthase B C-terminal domain 436 479 IPR032819 -
Pste9g00079 483 CDD PseudoU_synth_EcTruB 266 477 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pste9g00079 483 MobiDBLite consensus disorder prediction 63 126 - -
Pste9g00079 483 NCBIfam tRNA pseudouridine(55) synthase TruB 265 474 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pste9g00079 483 MobiDBLite consensus disorder prediction 104 126 - -
Pste9g00079 483 Gene3D Pseudouridine synthase 260 482 - -
Pste9g00079 483 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 169 481 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pste9g00079 483 SUPERFAMILY Pseudouridine synthase 265 478 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pste9g00079 483 Pfam TruB family pseudouridylate synthase (N terminal domain) 285 435 IPR002501 GO:0006396
Pste9g00079 483 Hamap tRNA pseudouridine synthase B [truB]. 263 483 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste9g00079 Pste-Chr9 333403 339413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste9g00079 266 457 NAC Transcription Factor Family AT3G57150 33.854 1.19e-19 90.1