Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g02117 TTTTACTTTTCTCCCTAACCTTCACCCACCATTTCCCCTCAAAAACCCCGCGGCGAAATAAAACACTCGAAATGACCAAAATACCCTCAATTTTTATCAAATTTTCAATTCACACCTTCATCATCCTCACCCTCTCGCTACCCTTCCCCGTAATTTCGCAGGACCAAACTACCCTCCTCCTTTCCCTCAAACGCCAACTCGGGGACCCGCCATCGCTTCAATCATGGAACTCCTTCTCGCCGCCGTGCGCCTGGCCGGAAATCCGCTGCTCCGGCGGCGCCGTCACGGAGCTCCACCTCGCCGGCAAAAACATCTCCGCCGCCCTCCCCGCCGCTATTTGCGGCCTCACCAAACTCATTCACCTCAACCTCTCCGACAACAACATCGTCGGCGAGTTTCCAACGTTCCTCTCCAACTGTTCCAACCTCAAACTCCTCGACCTCTCTCAGAACTACCTCGCCGGTTCCCTTCCTAACGACATTTCGAAACTCAAAACGGTAACGTACCTCGACATCGGCGCGAATAGCTTCTCCGGCGACGTTCCGGCGGCGATCGCCGCCGTCTCCGAGCTCCGAACGCTCCACCTCTACAAAAACGAGTTCAACGGCACGTTACCGCGCGAAATTGGAAACCTAACGAATCTCGAGGTGTTAGGTTTGGCTTATAATAACTTCGTTAACCAAACGGTGCCGTTTGAGTTTGGGAACTTGAAAAACCTAAAAATCATGTGGTTGGCGTCGTGTAATTTAAATGGAGCAATACCTGAAAGTTTCGCGGGCCTCACAAGCCTTGAACTATTCGACTTGTCGTTTAACCGTTTAACGGCGAATATTCCTAACGGTTTGTTCGGGCTACCGAACTTGAGGTTTTTGTTTTTGTACCGTAACGGTTTAACGGGTGAAATTCCCGGTTTGCCCGGTTCGGTTCAGGGTTTTAATTTGAGTATTGTTGATTTGTCGATGAACAATTTAACCGGTTCGATTCCGGAGGGGTTTGGAATGCTGCAAAATTTGACGGTTTTGCATTTGTTTTCGAATCAGTTAACTGGTGAAATTCCGAGAAGTTTGGGGTTTAGTACTTCGCTTAAGGACTTAAAAGTGTTTGGGAACAAGTTAAATGGGACTTTGCCTCCAGAACTTGGATTATATTCAAAGCTTGAGTTTTTTGAAGTTGCGAATAATCAACTGAGTGGTGGTTTACCTCAACATTTGTGTGATGGTGGCGCCTTGAAAGGTGTGATTGCGTTTTCTAATCACTTGAGTGGTGAGTTGCCAAAATGGATGGGGAATTGTAGTTCTTTGAAAAGTGTTCAGGTTTATAATAACAACTTTTCTGGTGAGGTTCCTTTGGGTTTGTGGGGTTTGAAAAATTTAACGACTTTGATGTTGAGTAATAACTCGTTTTCTGGTGAGCTTCCAAGTGAGTTAGCTTGGAATTTGTCGAGACTTGAGATGAGGAACAATTTGTTTTCGGGTAAGATTTCTCTTGGGGTTTCTTCTGCTGCGAATTTGGTGGTTTTTGATGCAGGAGATAACATGTTTTCTGGTGAAATTCCAAGGTCTTTGACGGGTCTTTCAAGGCTTATCACTCTCATGCTTGATGGTAACCAACTTTATGGTGAACTTCCATCTGAGATAATTTCGTGGAAATCGCTTAACACTTTGAGTCTTTCGAGGAACAAACTCTCTGGTACTATTCCTGAAGCTTTGTGTGATCTTACTGATCTTGTTTACTTAGACTTGGCTGAAAACAACATTTCGGGTGAAATCCCACCTCAACTTGGTAATTTGAGATTTGTTTTTCTCAACCTGTCGTCCAATAAGCTTTCAGGGAGTGTCCCAGATGACTTTAACAACCTTGCATATGAAAACAGTTTCTTGAACAACTCTGGTCTTTGTGCTTATAACCCAAATCTCAACCTTGGGAGCTGCTTGACCAAAAAGACCACCACCCCACAAACCAAAAACTCCAATTCTTCCAAATACCTTGTCATAATTCTTGTTCTCATCATCATTGTGTTGCTAGCCAGTGCTTTGCTTGTGTTTTTTAAGCTTAGAAATAACTGTGGGAAAAAACACTGTGGGCGTGACCTTTCAACTTGGAAGCTCACCTCATTCCAGAGGCTGAACTTCACTGAGTTGAACCTCTTCTCTAGTTTGACAGAGGAAAACCTCATAGGGAGTGGAGGATTTGGGAAAGTGTACCGTGTGGCCTCAGATAGGCCAGGTGAGTTTGTTGCTGTGAAGAAGATATGGAACTGTGGAAACCTTGATGAGAGACTGGAGAGGGAGTTCGTGGCTGAGGTTGAGATTCTTGGCAGCATTCGCCACTCCAATGTGGTGAAGCTTTTGTGCTGCTTTTCCAGTGAGAACTCGAAGCTTCTTGTGTATGAGTACATGGAGAATCAGAGCTTGGACAAGTGGCTTCATGGAAGGAAGAGAGTTTTGGCTAATGGATTGAGTTCACCTAACAAAAATTGTTTGCTCTTGAAGTGGCCAACTAGGTTGAGGATTGCAGTTGGAGCTTCACAAGGGTTGTGTTACATGCACCATGAGTGTTCTCCTCCTATTATCCATAGAGATGTCAAGTCAAGCAATATATTGATGGACTCAGAGTTTAGGGCCAGCATTGCAGATTTTGGGCTAGCTAGGATGTTGGCCAAGCCAGGGGAACCACGTACAATGTCCAATATTGCAGGGTCTCTTGGCTACATGCCACCAGAATACGCTTATTCAGCAAAGATTAATGAGAAAGCTGATGTATATAGTTTTGGGGTGGTACTCCTAGAGCTTGTAACCGGTAAAGTGCCATATAGTGGAGGCCAGCATGGAAGAAACCTGGTGGATTGGGCGTGGCAGCATTATAAGGAAGGGAAATGCCTCACTAATGCTTTGGATGAAGAAATCACAGAAACAAGTTATGTGGAAGAGATGACCACTGTCTTTAAATTAGGCCTTGTTTGCACAAGTAGGGTGCCCTCCAATAGGCCTTCCATGAAAGAGATTTTGCAAGTTCTTCGTGAGTGTTGTTATCCTTCAGGTAATGGCCGTAGGAGAGTGGAAATTGGATTTGATATTGCTCTTCTTCATGGTGATACCACTTACATTTCTAGTTATAAAGATAGTTCCAAGGCTATGACTGAAAATGAAGAAAGTTGCTTATATATTGTGTAACTACCACGTGTCTAATAGTTCAGTATTCCACAACAAAAAATAGTCATCAGAAAATATTGGAATTGGACTATGTAATAATGTCTTCAAGTGGTAGCATAAATCTTGTTGCCAAAAAATTTTATGAAGTGTAACATACAGGTAGTAATTTGCAGAAGTGGTC 3333 0.4392 MTKIPSIFIKFSIHTFIILTLSLPFPVISQDQTTLLLSLKRQLGDPPSLQSWNSFSPPCAWPEIRCSGGAVTELHLAGKNISAALPAAICGLTKLIHLNLSDNNIVGEFPTFLSNCSNLKLLDLSQNYLAGSLPNDISKLKTVTYLDIGANSFSGDVPAAIAAVSELRTLHLYKNEFNGTLPREIGNLTNLEVLGLAYNNFVNQTVPFEFGNLKNLKIMWLASCNLNGAIPESFAGLTSLELFDLSFNRLTANIPNGLFGLPNLRFLFLYRNGLTGEIPGLPGSVQGFNLSIVDLSMNNLTGSIPEGFGMLQNLTVLHLFSNQLTGEIPRSLGFSTSLKDLKVFGNKLNGTLPPELGLYSKLEFFEVANNQLSGGLPQHLCDGGALKGVIAFSNHLSGELPKWMGNCSSLKSVQVYNNNFSGEVPLGLWGLKNLTTLMLSNNSFSGELPSELAWNLSRLEMRNNLFSGKISLGVSSAANLVVFDAGDNMFSGEIPRSLTGLSRLITLMLDGNQLYGELPSEIISWKSLNTLSLSRNKLSGTIPEALCDLTDLVYLDLAENNISGEIPPQLGNLRFVFLNLSSNKLSGSVPDDFNNLAYENSFLNNSGLCAYNPNLNLGSCLTKKTTTPQTKNSNSSKYLVIILVLIIIVLLASALLVFFKLRNNCGKKHCGRDLSTWKLTSFQRLNFTELNLFSSLTEENLIGSGGFGKVYRVASDRPGEFVAVKKIWNCGNLDERLEREFVAEVEILGSIRHSNVVKLLCCFSSENSKLLVYEYMENQSLDKWLHGRKRVLANGLSSPNKNCLLLKWPTRLRIAVGASQGLCYMHHECSPPIIHRDVKSSNILMDSEFRASIADFGLARMLAKPGEPRTMSNIAGSLGYMPPEYAYSAKINEKADVYSFGVVLLELVTGKVPYSGGQHGRNLVDWAWQHYKEGKCLTNALDEEITETSYVEEMTTVFKLGLVCTSRVPSNRPSMKEILQVLRECCYPSGNGRRRVEIGFDIALLHGDTTYISSYKDSSKAMTENEESCLYIV 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g02117 1033 ProSitePatterns Protein kinases ATP-binding region signature. 702 726 IPR017441 GO:0005524
Pste8g02117 1033 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 29 188 - -
Pste8g02117 1033 SUPERFAMILY Protein kinase-like (PK-like) 689 982 IPR011009 -
Pste8g02117 1033 SUPERFAMILY L domain-like 289 597 - -
Pste8g02117 1033 ProSiteProfiles Protein kinase domain profile. 696 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste8g02117 1033 Gene3D Ribonuclease Inhibitor 29 180 IPR032675 -
Pste8g02117 1033 Gene3D Ribonuclease Inhibitor 181 285 IPR032675 -
Pste8g02117 1033 Pfam Leucine rich repeat 215 274 IPR001611 GO:0005515
Pste8g02117 1033 Gene3D Phosphorylase Kinase; domain 1 702 776 - -
Pste8g02117 1033 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515
Pste8g02117 1033 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 495 617 - -
Pste8g02117 1033 Gene3D Ribonuclease Inhibitor 286 456 IPR032675 -
Pste8g02117 1033 Gene3D Ribonuclease Inhibitor 457 700 IPR032675 -
Pste8g02117 1033 Pfam Protein kinase domain 698 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste8g02117 1033 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Pste8g02117 1033 FunFam Receptor-like protein kinase HSL1 isoform A 204 454 - -
Pste8g02117 1033 FunFam Kinase family with leucine-rich repeat domain-containing protein 776 997 - -
Pste8g02117 1033 FunFam Receptor-like protein kinase HSL1 676 775 - -
Pste8g02117 1033 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 215 981 - -
Pste8g02117 1033 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Pste8g02117 1033 SMART serkin_6 696 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste8g02117 1033 SUPERFAMILY L domain-like 50 377 - -
Pste8g02117 1033 SMART LRR_typ_2 92 116 IPR003591 -
Pste8g02117 1033 SMART LRR_typ_2 311 335 IPR003591 -
Pste8g02117 1033 SMART LRR_typ_2 431 455 IPR003591 -
Pste8g02117 1033 SMART LRR_typ_2 549 573 IPR003591 -
Pste8g02117 1033 SMART LRR_typ_2 237 261 IPR003591 -
Pste8g02117 1033 SMART LRR_typ_2 501 525 IPR003591 -
Pste8g02117 1033 SMART LRR_typ_2 188 212 IPR003591 -
Pste8g02117 1033 SMART LRR_typ_2 213 236 IPR003591 -
Pste8g02117 1033 Gene3D Transferase(Phosphotransferase) domain 1 777 992 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g02117 Pste-Chr8 18456153 18460296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g02117 22 984 Receptor kinase-like Gene Family AT5G25930 54.630 0.0 1024
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pste8g02117 Pkinase 8.7e-47 CL0016