LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste8g02107	CTATAGCCATGGAATCGCCTAAGTCCTCCCCATGTTTCCCACAATTCACCCTTGACACAAACAACAATAACCCCGACCACTTCATCATTGAGGACCTCTTGGATTTTTCCAACGATGATGCTATCATCGTCGACACCACCACTTTCGACTCCGTCCACGGCAACTCCGCCAACATTGTCACCACTGTCGATAGTTGTAACTCCTCCTCCTTATCTGACTCTGTTCCTGATATCTCTGGTGGTCATTTCTCTGGCGACCTTTGTGTTCCGGACATACAAAAGATGCAACTAATATCCGGCATGAATGCGCGAAACGACGACGTATCAGAGGTCCGTGATGGGTTCTACTCGGAGCCCACTAGAAACAACCTGATATTCAATTCGAAAGTGTCGGTTCCAGCCAAGGCCCGTAGCAAGAGGTCGCGCGGGCCTCCATGCAACTGGGCCTCACGTCTCCTCATTCTGTCTCCCACAACGTCATTTTCAGACCCTGAAGTCTTCATTCCTACTAGTACTGAGTCTGGCTCAATGCCAGCTAAAAAACCCACAAAAGCGAAAAAGCCCGCAAAGGATGGTGGCAGTGATGGTAGTAGTGGTGATGGACGTAGGTGTCTACATTGTGCCACTGACAAGACCCCACAGTGGCGAACTGGGCCCATGGGTCCAAAGACATTGTGCAATGCATGTGGCGTGAGATATAAGTCAGGTCGGTTGGTGCCTGAGTATAGACCTGCAGCCAGCCCGACTTTTGTTCTCACAAAACATTCCAACTCGCATCGCAAAGTGTTGGAGCTGCGAAGACAAAAGGAAATGGTACGAGCCCAACAACATCAACATCAATACCTACACCGTCATCACCATCACCACCACCAGAATATAATGTTTGATGTATCCAACGGTGATGATTACTTGATCCACCAACACGTGGGACCTGATTTTCGACAGCTCATC	950	0.4926	MESPKSSPCFPQFTLDTNNNNPDHFIIEDLLDFSNDDAIIVDTTTFDSVHGNSANIVTTVDSCNSSSLSDSVPDISGGHFSGDLCVPDIQKMQLISGMNARNDDVSEVRDGFYSEPTRNNLIFNSKVSVPAKARSKRSRGPPCNWASRLLILSPTTSFSDPEVFIPTSTESGSMPAKKPTKAKKPAKDGGSDGSSGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRAQQHQHQYLHRHHHHHHQNIMFDVSNGDDYLIHQHVGPDFRQLI	314

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste8g02107	314	PIRSF	Txn_fac_GATA_plant	9	292	IPR016679	GO:0003677\|GO:0005634\|GO:0045893
	Pste8g02107	314	PANTHER	GATA TRANSCRIPTION FACTOR	81	274	-	-
	Pste8g02107	314	Pfam	GATA zinc finger	201	234	IPR000679	GO:0006355\|GO:0043565
	Pste8g02107	314	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	197	259	-	-
	Pste8g02107	314	Gene3D	-	192	282	IPR013088	GO:0006355\|GO:0008270
	Pste8g02107	314	CDD	ZnF_GATA	200	247	IPR000679	GO:0006355\|GO:0043565
	Pste8g02107	314	FunFam	GATA transcription factor	192	278	-	-
	Pste8g02107	314	ProSiteProfiles	GATA-type zinc finger domain profile.	195	231	IPR000679	GO:0006355\|GO:0043565
	Pste8g02107	314	ProSitePatterns	GATA-type zinc finger domain.	201	226	IPR000679	GO:0006355\|GO:0043565
	Pste8g02107	314	SMART	GATA_3	195	245	IPR000679	GO:0006355\|GO:0043565
	Pste8g02107	314	MobiDBLite	consensus disorder prediction	162	201	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste8g02107	Pste-Chr8	18207789	18209731	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste8g02107	25	314	C2C2-Gata Transcription Factor Family	AT5G25830	49.240	1.24e-80	246

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Pste8g02107		GATA	2.8e-15	CL0167