LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste8g02086	ATAACAATGAGTGTCTCCTGTTCTTCCTCCCGCTGCACACTATCAGTGGTTGGGTTTGTGATTTTCATTCTTGTAGCAGCAAGTTTCTATGGCGAGATCACTTTGAATCATGCGGATGACAAGAACTGTTATTCTTCTTGCGGAAAACTTCTCAACATAACATACCCATTTCGACTGAAAAGTGACCCACATCACTGTGGCCACAAAGGCTACGAATTAGAGTGCATAAACAACAAGACAACAAAAACTTTGTTTTCAGGGAAATACTATGTGCATGATATCAATTACAAGCAATACCAGATTCGATTGACTGATGCTGGTGTTGTGGAGAACACTACTTGCTCTTTTCCACGCTATCACTTAAGAGAAGAGAATTTCGGTTCCAAGTCTAATGTTCCGCTAACTGGAGACAATTTTTCTATCAGTAGTAATGGTTCTCTAACTGTGCAAGGGTATCCATACTATTCTACAAGTGTAGTGTTTCTGAACTGTAGTAAACCAGTAACAGATGATCCTCGGTACGTGGAAGCTAATACCAGTGGTTGTGATTTTGGAGGCTATATCTATGCTGTTGTAGAAACTGTTCGGGAATTTACACTTATGGACATCAAGGTTGGGTGCCACGTGAAAGTTTTCACCATGGCAAGCTTGACACAGAGCAGAAACGTTTTTAATATAGATTTAACACATAATAGGAACGTTTCCTATGCTTATATCCGCAAGTTGTTGGAAGATGGATTTTGGTTGTCTTGGTTATCACTTATTTGTTCAGATAGATGCAAAGACATAGAGGCTATGTTTTGCTCCGTGAATCAGACAACACTACAAATGGAATGTAAACCTAAGGGATTCTGCAACATGCTACACTACGGATGGTACCAAGCCAATGATGACTTGAACCATGATTCCGACAATTGTGTATTCCCGATCCCAAGAATTCTCGGAAATACACTGCGTATGATGAGGGAAATTAAGAGGGAGAGTGCAAGGGAGTTATCCAACTATATGATGTTGTATTTTCTTACAATCTTGATGAAATTTATCTTCACAGAATTTTTCAAAAGAATAAAAGATATCAAGCAACCACTATCCTACTCACGTTATTATAAAGAAGATCTCATAGGAAAAGATGTTCTCCCAATATTTCTAGCAGCTAGATATCTATTCGGAGTTGCACTTTTGATTGGGTTATTTATTCGTATGTGGCAAAGAAGGCATTTCTCAATGTATGAAAACATTGAAAACTTTTTGCTAGACAGCAATCTAAATCCAATTAGATATGAATATACAGAAATCAAGAAAATCACCAAAGGTTTCAAAGTGAAATTAGGTGAAGGTGGTTTTGGTTCTGTGTATAAAGGAAAGCTTACAAGTGGGTTAGATGTAGCAATCAAGATGTTGAGTAAAATCAAAGATAATGGACAAGAATTTGTAAATGAAGTAGCTACTATTGGAAGAATACATCACGTTAATATAGTAAGTCTTATTGGATATTGTGTTGAAGGAAAAAGACGTGCTTTAGTTTATGAATACATGTCTAATGGATCTTTGGATAAATATATTTTCTCTAAAGAAGGATGTCTCCCTTTAAGTTATGAGAAAACATATGAAATATCACTTGGAATAGCTCGTGGGATTGAATATCTACATCAGGGTTGTGATATGCAAATTTTACATTTTGATATCAAGCCTCATAATATTCTTTTAGACGATAATTTTTGTCCAAAGGTTTCAGATTTTGGACTTGCAAATCTATATCCCATGAAAGATGGGTCTGTTGTTTTAACTTCAATAAGAGGAACATTAGGTTATATGGCTCCAGAACTATTCTACAAAAATATAGGTGGAGTTTCACATAAGACCGATGTCTATAGCTTTGGAATGCTTTTGATGGAAATGGGAAGTAGAAGAAGGAACTCAAATCCTTATGCAGAGCATTCAAGCCAAAATTATTTTCCATTTTGGATCTATGATCAATTCAAGGAAGAAAAATATATTGAAATGGAAGATGCCCAAGAAGAGGATCAAATTCTAGTTAAAAAGATGCTCATAGTTGCACTTTGGTGTATACAGTTGAAACCAAATGATCGTCCTTCGATGAAGAATGTTATAAAAATGTTGGAGGGAACAATTGAAAGTCTTGAAATGCCTCCAAAGCCTTCTTTTTGTCCCTAA	2175	0.36	ITMSVSCSSSRCTLSVVGFVIFILVAASFYGEITLNHADDKNCYSSCGKLLNITYPFRLKSDPHHCGHKGYELECINNKTTKTLFSGKYYVHDINYKQYQIRLTDAGVVENTTCSFPRYHLREENFGSKSNVPLTGDNFSISSNGSLTVQGYPYYSTSVVFLNCSKPVTDDPRYVEANTSGCDFGGYIYAVVETVREFTLMDIKVGCHVKVFTMASLTQSRNVFNIDLTHNRNVSYAYIRKLLEDGFWLSWLSLICSDRCKDIEAMFCSVNQTTLQMECKPKGFCNMLHYGWYQANDDLNHDSDNCVFPIPRILGNTLRMMREIKRESARELSNYMMLYFLTILMKFIFTEFFKRIKDIKQPLSYSRYYKEDLIGKDVLPIFLAARYLFGVALLIGLFIRMWQRRHFSMYENIENFLLDSNLNPIRYEYTEIKKITKGFKVKLGEGGFGSVYKGKLTSGLDVAIKMLSKIKDNGQEFVNEVATIGRIHHVNIVSLIGYCVEGKRRALVYEYMSNGSLDKYIFSKEGCLPLSYEKTYEISLGIARGIEYLHQGCDMQILHFDIKPHNILLDDNFCPKVSDFGLANLYPMKDGSVVLTSIRGTLGYMAPELFYKNIGGVSHKTDVYSFGMLLMEMGSRRRNSNPYAEHSSQNYFPFWIYDQFKEEKYIEMEDAQEEDQILVKKMLIVALWCIQLKPNDRPSMKNVIKMLEGTIESLEMPPKPSFCP	724

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste8g02086	724	ProSiteProfiles	Protein kinase domain profile.	437	711	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste8g02086	724	ProSitePatterns	Protein kinases ATP-binding region signature.	443	465	IPR017441	GO:0005524
	Pste8g02086	724	SUPERFAMILY	Protein kinase-like (PK-like)	422	708	IPR011009	-
	Pste8g02086	724	Gene3D	Transferase(Phosphotransferase) domain 1	512	717	-	-
	Pste8g02086	724	Pfam	Protein kinase domain	441	705	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste8g02086	724	Pfam	Wall-associated receptor kinase galacturonan-binding	43	105	IPR025287	GO:0030247
	Pste8g02086	724	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	409	721	IPR045874	GO:0004672
	Pste8g02086	724	Gene3D	Phosphorylase Kinase; domain 1	415	511	-	-
	Pste8g02086	724	SMART	serkin_6	437	707	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste8g02086	724	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	557	569	IPR008271	GO:0004672\|GO:0006468
	Pste8g02086	724	FunFam	serine/threonine-protein kinase PBS1-like	408	511	-	-
	Pste8g02086	724	FunFam	PR5-like receptor kinase	512	719	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste8g02086	Pste-Chr8	17559095	17563979	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste8g02086	371	721	Receptor kinase-like Gene Family	AT5G38260	45.915	8.73e-102	324

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Pste8g02086		PK_Tyr_Ser-Thr	6e-47	CL0016