Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g02078 TAAAAATCCAAACTTTCCTCGAATTTTAACTCTTTAATGCAAAACCAAAGCCAACCCACTTGTGTTGGTGCAGTGATAACCATCACTTCCACACTCTTTTCCTCGAACCTTCCTCTCTTCTCTCTTTAGTTTCAATCTGTGTTCATAACGCTTCATGTTTCTCACTCAAGATTAGGAGGGAGAGTGGTTCATGAAGGAGGAATTCAGTGAGACTTACGAGGCTGGTTTTTTCTGCATTGCTTTTGAAGTAGGCTACAATTATGAGTACTACACACCAAGAGAAGTTTGTTAGGTTTCAGAATTGGAATTCAGAGAAGGGTTCTGAGAGCAATTATAATTATCCTGTGATTAAAATAACACAGTCGGAGAGATTTAGAACTACATTAAGTTCAGTTTCTGAGAAGTTTCAAAATGGATTGGATTCTGGTTCTGAGAGGATAAAGAGATTCAGAACATCATTCAAATCTTTTCCCTATAGCAGTCTTCTTTCTAGAAGTTTTAGTTCTAGAAAGAAAATCCTTGATCCACAGGGTCCTTTCCTCCAAAAGTGGAACAAGATTTTTGTGTTGCTATGTGTTATTGCAGTATCGCTGGATCCTTTGTTCTTTTATGTCCCGGTTATTGATGATGCGAGGAAATGTCTTTCACTGGATACCAATATGGAGATTACAGCAACTGTCTTGAGATCTTTCTCTGATGCTCTTTATATAATCCATATGATTTTCCAATTTCGTACTGGATTTATTGCTCCCTCTTCTCGTGTATTTGGAAGGGGTGTGTTGGTTGAAGATTCTTGGGCAATAGCAAGGAGGTATCTATCATCATATTTCTTAGTTGACATTCTTGCTGTTCTTCCCCTCCCACAGGTGGTGATTCTAGTTATCATTCCAAAGATGAGTGGTTTTAAATCACTCAATACAAAGAACTTGCTAAAATTTGTCGTTTTCTTCCAATATGTGCCTCGTCTAGTGCGAATAATTCCATTATATAATGAAGTTACAAGGACCTCTGGCATTCTCACTGAAACTGCTTGGGCTGGAGCTGCATTTAATCTCTTTCTTTACATGCTTGCAAGTCATGTTGTTGGTGCCTTTTGGTACTTGTTTTCTATAGAACGAGAAACCACATGTTGGCAAGAAGCATGTCAAAGTAATACAGTGTGTAACAAGGCCGACATGTATTGTAATGATTATTATTTGGGTGGGGCGAGCAAAATCTCAACATTCCTGAATACTTCTTGTCCAATACAGAATGAAGATAAAAAACTCTTTAATTTTGGAATGTTCCTTGATGCCCTTCAGTCTCGTGTTGTGGAGTCAAGAGATTTTCCACAAAAGTTCTTTTACTGCTTTTGGTGGGGCCTGAAAAATTTGAGTTCTCTTGGTCAGAACCTGGCAACAAGTACCTATGTTTGGGAAATCATTTTTGCAGTTTTCATTTCTGTATCTGGTTTGGTATTGTTTTCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCTACAACCACTAGATTGGAGGAGATGAGAGTAAAAAGGAGGGATGCAGAACAGTGGATGTCTCATCGATTACTTCCTGACGGCCTGAGAGAGCGAATCAGACGTTATGAACAGTACAGATGGCAAGAAACCAGAGGTGTAGATGAAGACAATTTGATTCGTAATCTTCCCAAGGATTTAAGAAGAGACATTAAGCGTCATCTTTGTTTGGCTTTGCTGATGAGAGTACCAATGTTTGAGAAGATGGATGAACAACTTCTGGATGCAATGTGTGACAGACTCAAGCCGGTGCTTTACACAGAAGAAAGCTACATAGTCAGGGAAGGAGACCCGGTTGACGAGATGCTCTTCATAATGCGTGGCAAGCTATTGACCATGACGACCAATGGCGGAAGAACTGGCTTCTTCAACTCAGAGTACCTCAAGGCTGGTGACTTCTGTGGAGAGGAGCTCCTCACATGGGCCTTAGATCCTCATTCCTCATCCAACCTTCCTACCTCAACAAGGACTGTCCAAACCCTTTCAGAAGTGGAAGGTTTTGCCCTACAAGCCAATGACTTGAGGTTTGTGGCATCACAGTTCCGGCGCCTTCACAGCAAACAGCTGCGCCACACTTTCAGGTTCTACTCGCAGCAGTGGCGCACGTGGGCCGCCTGTTTCATCCAAGCAGCGTGGCGGCGCTATAGTAAAAGGAAGCTTGAAGAGTCCCTTGTTGTAGAGGAGAGTAGGCTGCAAGATGCATTGGCTAAAGCTGGTGGTAGCTCACCTAGCCTTGGTGCAACAATATATGCTTCAAGGTTTGCTGCTAATGCACTCAAATTGTTACGTCGCAATGGTACAAAGAAGGGTAGGGTGCCAGAGAGATTACCACCCTTGATGCTTCAGAAGCCTGCAGAACCTGATTTCACTGCTGATGAGGAGGAATAAAGGGTGTGATTCAGAAGGAAAAATCATGAACATGGAATGCTATTTTGGTAGAATTGTAAGTGTACAATATAATATATATGGTCCATAAACTGTGAGGCAAGTTGTATATATATATATAAAGTATCTTGTTATTGAATATGTTTTAATGAGAAACAGACTCAGACATTGTAAAAAGAAAGTTTTCC 2611 0.4083 MSTTHQEKFVRFQNWNSEKGSESNYNYPVIKITQSERFRTTLSSVSEKFQNGLDSGSERIKRFRTSFKSFPYSSLLSRSFSSRKKILDPQGPFLQKWNKIFVLLCVIAVSLDPLFFYVPVIDDARKCLSLDTNMEITATVLRSFSDALYIIHMIFQFRTGFIAPSSRVFGRGVLVEDSWAIARRYLSSYFLVDILAVLPLPQVVILVIIPKMSGFKSLNTKNLLKFVVFFQYVPRLVRIIPLYNEVTRTSGILTETAWAGAAFNLFLYMLASHVVGAFWYLFSIERETTCWQEACQSNTVCNKADMYCNDYYLGGASKISTFLNTSCPIQNEDKKLFNFGMFLDALQSRVVESRDFPQKFFYCFWWGLKNLSSLGQNLATSTYVWEIIFAVFISVSGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDGLRERIRRYEQYRWQETRGVDEDNLIRNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPTSTRTVQTLSEVEGFALQANDLRFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKRKLEESLVVEESRLQDALAKAGGSSPSLGATIYASRFAANALKLLRRNGTKKGRVPERLPPLMLQKPAEPDFTADEEE 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g02078 721 Gene3D - 96 415 - -
Pste8g02078 721 FunFam Cyclic nucleotide-gated ion channel 1 418 482 - -
Pste8g02078 721 CDD CAP_ED 491 622 IPR000595 -
Pste8g02078 721 ProSiteProfiles cAMP/cGMP binding motif profile. 491 575 IPR000595 -
Pste8g02078 721 SUPERFAMILY Voltage-gated potassium channels 88 413 - -
Pste8g02078 721 FunFam Cyclic nucleotide-gated ion channel 1 489 607 - -
Pste8g02078 721 Gene3D Helix hairpin bin 417 482 - -
Pste8g02078 721 SUPERFAMILY cAMP-binding domain-like 420 613 IPR018490 -
Pste8g02078 721 SMART cnmp_10 491 619 IPR000595 -
Pste8g02078 721 MobiDBLite consensus disorder prediction 692 721 - -
Pste8g02078 721 Coils Coil 643 663 - -
Pste8g02078 721 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 73 715 - -
Pste8g02078 721 Pfam Ion transport protein 97 418 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pste8g02078 721 Gene3D Jelly Rolls 489 609 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g02078 Pste-Chr8 17370700 17377393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g02078 6 719 Ion Channels AT5G53130 76.569 0.0 1130