Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g02068 ATGGAACCCCAGCAAAGTCCATTAATAGATGAAACCTTATGTGATATCTTCCAAGACACACACTTTGGTGGAGGGGACCTCTTTTCCATTTTGGAGAGCCTTGAAGACTTGAAAGAGCTTCCTCCTATTATCAACAATGAAGCTGCAGCTACTACTGCTACTACTATTCCAACTTCAAAAGAAAATGAGAAAAACTCGAGAGTGGTGTCTCAAAAGGTCTCATTGTTATCTTCAAGTGCTCCACAAGATTCTGAAACTGAACCTGAAACCTCACCCAAAAGCAAGAGACAAAAGCTTAGCCCCACATCGTCTGAGGAACCACTTAAGATGTCTCACATAACAGTGGAACGAAACCGCAGAAAGCAAATGAATGAGAACTTGTCGGTGTTGAGGTCTCTTATGCCTTCCTTCTATGTCAAACGGGGAGACCAAGCATCAATAATTGGAGGTGTAGTTGATTACATCAATGAGTTGCAGCAGCTACTTCAATGCCTAGAGGCCAAGAAACAAAGAAAAGTTTACAATGATGTACTAAGTCCTAGGCTAGTAGTTTCAAGCCCAAGGCCTTCACCACTAAGCCCTAGAAAACCACCCTTGAGCCCTAGAATAAACCTCCCCATTAGTCCAAGGACTCCACAACCAGGTAGCCCTTACAAGCCAAGGTTGCAACCAGGTTACCTTTCCCCAACCATAGCCAACTCTCCCACTTCTTCTGCTTCTTCTTCCATCAATGATAATATCAATGAGCTTGTTGCAAACTCAAAGTCTGTTATTGCTGATGTTGAGGTCAAGTTTTCAGGTCCTCATGTTCTTCTTAAGACTGTGTCACCACCAATTCCAGGTCAGGCCCTGAGAATAATATCAGCTCTTGAAGACCTTTCCCTTGAAATTGTCCATGTGAACATTAACACTGCTGACGAAACCATGCTAAATTCATTCACTATTAAGGTACATCATGGCTAA 963 0.4268 MEPQQSPLIDETLCDIFQDTHFGGGDLFSILESLEDLKELPPIINNEAAATTATTIPTSKENEKNSRVVSQKVSLLSSSAPQDSETEPETSPKSKRQKLSPTSSEEPLKMSHITVERNRRKQMNENLSVLRSLMPSFYVKRGDQASIIGGVVDYINELQQLLQCLEAKKQRKVYNDVLSPRLVVSSPRPSPLSPRKPPLSPRINLPISPRTPQPGSPYKPRLQPGYLSPTIANSPTSSASSSINDNINELVANSKSVIADVEVKFSGPHVLLKTVSPPIPGQALRIISALEDLSLEIVHVNINTADETMLNSFTIKVHHG 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g02068 320 CDD bHLH_AtFAMA_like 110 181 - -
Pste8g02068 320 Pfam Helix-loop-helix DNA-binding domain 109 159 IPR011598 GO:0046983
Pste8g02068 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 106 174 IPR036638 GO:0046983
Pste8g02068 320 MobiDBLite consensus disorder prediction 52 87 - -
Pste8g02068 320 MobiDBLite consensus disorder prediction 190 219 - -
Pste8g02068 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 107 158 IPR011598 GO:0046983
Pste8g02068 320 SMART finulus 113 164 IPR011598 GO:0046983
Pste8g02068 320 FunFam Transcription factor SPEECHLESS 100 173 - -
Pste8g02068 320 MobiDBLite consensus disorder prediction 183 221 - -
Pste8g02068 320 Coils Coil 155 175 - -
Pste8g02068 320 Gene3D - 100 173 IPR036638 GO:0046983
Pste8g02068 320 MobiDBLite consensus disorder prediction 52 110 - -
Pste8g02068 320 PANTHER TRANSCRIPTION FACTOR FAMA 15 317 IPR044283 GO:0003700|GO:0010052
Pste8g02068 320 MobiDBLite consensus disorder prediction 88 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g02068 Pste-Chr8 17158133 17160147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g02068 14 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.261 4.44e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste8g02068 HLH 3.3e-10 No_clan