Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g02058 AACACAGACCTCATCATGTCAAGCAATGCATTAACTCTTTTTATCTTGTTTCTCAACATCTCCTTGTTTCCAGCAATCTCAGCTCTGAACCAGGAAGGTCTCTCTCTACTTTCATGGCTCTCAACATTCAATTCCTCTGATTCTGCTACTGCTTTTTCATCATGGGATCCAACCCACCAAAGTCCATGCAGATGGGACTATATAAAATGTTCCAAAGAAGGGTTTGTTTCAGAGATCATAATAACATCCATTGATCTTCATACCACCTTCCCCACACAGCTTCTTTCTTTTGGCAACCTTACAACTCTAGTAATCTCAAATGCAAATCTCACTGGTGAGATTCCCAGTTCAGTGGGAAACTTGTCATCACTGATTACTTTGGACCTCAGTTTCAATGCTTTATCAGGAACCATTCCATCTGAGATAGGAAAGTTATACAAACTGCAGTGGTTGTATTTGAATTCAAATTCTTTACAAGGTGGAATTCCAACCCAAATAGGAAACTGTTCAAAGTTGAGGCAGCTAGAACTGTTTGATAACCAACTATCTGGCTTGCTTCCTGGTGAAATAGGCCAGTTGAGAGATCTTGAAACGCTTCGGGCTGGTGGAAATCCGGGGATTCATGGTGAAATTCCAATGCAGATTTCAAACTGTAAGGCTCTAGTTTATCTAGGCCTTGCAGATACTGGGATATCAGGGGAGATTCCACCAACTATAGGAGAACTTACAAGTCTCAAGACACTTCAAATCTACACTGCACACCTCACTGGTAGCATTCCACCAGAGATTCAAAACTGCTCAGCCTTGGAGGAGTTGTTTCTGTATGAAAACCAGCTTTCTGGAAACATTCCTATTGAATTGGGTTCCATGAAAAGCCTCAGAAAGGTACTTTTGTGGCAGAATAATTTCACTGGAACAATTCCAGAAAGTCTTGGAAACTGTACAAGCCTGAGAGTTATAGATTTTTCTATGAATTCTTTAGTTGGTGAACTTCCAGAGACTCTCAGTAGTCTAATCTTATTGGAGGAGCTTCTTTTGTCTAATAATAACATTTCTGGAGAGATACCTTCTTATATTGGCAACTTCCTCAGTTTGAAGCAACTGGAATTGGATAATAACAGATTCTCTGGGGAGATTCCACCTGTCTTGGGGAAACTGAAGGAACTCACCTTGTTCTATGCCTGGCAGAATCAGCTCCATGGAAGCATACCAACAGAACTCTCCAATTGTGAGAAACTTCAAGCACTTGATCTTTCACATAATTTCCTCTCTGGGTCCATTCCAAGTTCACTATTTCATCTAGAGAATTTAACTCAGTTGTTGTTGTTATCAAATAGACTTTCAGGTCAAATTCCTCCAGACATTGGCAGTTGCACCAGGTTGGTCAGGCTAAGGTTGGGGTCAAACAACTTCACTGGTCAAATTCCACCCGAAATAGGCTTTTTAAGCAGTTTGAGCTTTCTTGAATTGTCAGATAATTTACTCAGTGGAGATATACCCTTTGAGATAGGTAACTGTGCTAAGCTAGAAATGCTTGACTTGCACAGCAATCAGTTGCAAGGAGCAATTCCTTCCACATTAGAATTCGTAGTCAGTCTTAATGTATTGGATCTTTCTGCAAACAGAATAACTAGCAGCATTCCTGAAAATTTAGGCAAACTAGCATCTCTAAATAAGTTGATACTCAGTGGAAACCAAATCACTGGTTTGATCCCTCAGTCACTTGGCTTTTGTAAGGCTTTGCAGTTGCTTGATATCAGCAACAATAAGATCAGTGGTTCCATTCCAAATGAAATTGGTTACTTGCAAGAATTAGATATCCTCTTGAACTTGAGCTGGAATTCTTTATCAGGCTCTATCCCAGAGACCTTCTCAAACCTCTCAAAACTTTCCAATTTGGACCTCTCTCACAACAAACTCACAGGGAGTCTAATTGTACTTGGTAGTCTTGACAATCTAGTTTCTCTTAATGTCTCCTATAACAGTTTTTCTGGTTCTCTTCCTGATACAAAATTCTTCAAGGATCTCTCTCCTGCTGCATATGCTGGCAACCCTGATCTATGTCTTACCAAGTGTCCAGTAAGTGGACATCACAAAGGCATCAAGTCCATAAGAAACATCATCATATACACTTTCCTTGGTGTTATTTTCACTTCAGGGTTTGTTACTTTTGGAGTAATCTTAGCCCTCAAAATTCATGGAGGTACTAACTTTGACAGTGAAACGCAATGGGCTTTTACTCCATTTCAAAAACTCAACTTCTCCATCAATGACATTATCCCAAAGCTATCAGATTCAAACATTGTGGGAAAGGGTTGCTCAGGAGTCGTTTACCGTGTGGAGACTCCAATGAACCAGGTTGTTGCAGTGAAGAAGCTGTGGCCACTAAAGCATGATGAAACACCAGAAAGAGACCTTTTTGCTGCAGAAGTTCATACCCTTGGATCAATAAGGCATAAAAATATAGTGAGACTTTTAGGATGCTACAACAATGGAAGAACTAGATTGCTCTTGTTTGATTACATATGCAATGGGAGTTTGTCTGGATTGCTCCATGAAAATCATTTGTCCTTGGACTGGGATGCAAGATATAAGATCATTCTGGGAGCAGCTCATGGCTTAGAATATCTTCATCATGATTGTATCCCTCCAATCATCCATAGAGACATTAAGGCTAACAACATCTTGGTAGGTCCACAATTTGAAGCTTTTCTTGCAGATTTTGGCCTTGCAAAACTTGTTGGTTCCTCTGATTATTCCGGAGCTTCTGCAATAATTGCAGGTTCTTATGGATACATAGCTCCTGAATATGGATACAGTTTAAGGATCACAGAGAAGAGTGATGTTTACAGCTTTGGGGTAGTGCTAATTGAGGTCTTAACAGGAATGGAACCAATAGATAGCAGGATTCCAGAAGGTTCTCACATTGTCCCTTGGGTTATAAGGGAAATCAGAGAGAAAAAAAGAGAATTTGCATCAATTCTGGACCAGAAACTAGCACTGCAGTGTGGAACACAAATCCCTGAGATGCTTCAAGTACTAGGGGTGGCTCTCCTCTGTGTGAATCCTTCACCAGAAGAAAGACCTACAATGAAAGATGTAACAGCAATGCTCAAGGAGATCAGACATGAAAATGTGGATTTTGATTTTGAGAAGTCAAATCTTCTGCATAAAGGAGGTATCAACAATTCAAAAGCTTCAGTTCAGTGTCCAAGCTTCTCCAGATCTTGTAGACCTCTAACTGAATCACCATCCTCTTCAGTGTCACCAAATTAA 3276 0.4017 NTDLIMSSNALTLFILFLNISLFPAISALNQEGLSLLSWLSTFNSSDSATAFSSWDPTHQSPCRWDYIKCSKEGFVSEIIITSIDLHTTFPTQLLSFGNLTTLVISNANLTGEIPSSVGNLSSLITLDLSFNALSGTIPSEIGKLYKLQWLYLNSNSLQGGIPTQIGNCSKLRQLELFDNQLSGLLPGEIGQLRDLETLRAGGNPGIHGEIPMQISNCKALVYLGLADTGISGEIPPTIGELTSLKTLQIYTAHLTGSIPPEIQNCSALEELFLYENQLSGNIPIELGSMKSLRKVLLWQNNFTGTIPESLGNCTSLRVIDFSMNSLVGELPETLSSLILLEELLLSNNNISGEIPSYIGNFLSLKQLELDNNRFSGEIPPVLGKLKELTLFYAWQNQLHGSIPTELSNCEKLQALDLSHNFLSGSIPSSLFHLENLTQLLLLSNRLSGQIPPDIGSCTRLVRLRLGSNNFTGQIPPEIGFLSSLSFLELSDNLLSGDIPFEIGNCAKLEMLDLHSNQLQGAIPSTLEFVVSLNVLDLSANRITSSIPENLGKLASLNKLILSGNQITGLIPQSLGFCKALQLLDISNNKISGSIPNEIGYLQELDILLNLSWNSLSGSIPETFSNLSKLSNLDLSHNKLTGSLIVLGSLDNLVSLNVSYNSFSGSLPDTKFFKDLSPAAYAGNPDLCLTKCPVSGHHKGIKSIRNIIIYTFLGVIFTSGFVTFGVILALKIHGGTNFDSETQWAFTPFQKLNFSINDIIPKLSDSNIVGKGCSGVVYRVETPMNQVVAVKKLWPLKHDETPERDLFAAEVHTLGSIRHKNIVRLLGCYNNGRTRLLLFDYICNGSLSGLLHENHLSLDWDARYKIILGAAHGLEYLHHDCIPPIIHRDIKANNILVGPQFEAFLADFGLAKLVGSSDYSGASAIIAGSYGYIAPEYGYSLRITEKSDVYSFGVVLIEVLTGMEPIDSRIPEGSHIVPWVIREIREKKREFASILDQKLALQCGTQIPEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRHENVDFDFEKSNLLHKGGINNSKASVQCPSFSRSCRPLTESPSSSVSPN 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g02058 1091 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 412 696 - -
Pste8g02058 1091 Gene3D Transferase(Phosphotransferase) domain 1 842 1058 - -
Pste8g02058 1091 PRINTS Leucine-rich repeat signature 413 426 - -
Pste8g02058 1091 PRINTS Leucine-rich repeat signature 627 640 - -
Pste8g02058 1091 ProSiteProfiles Leucine-rich repeat profile. 629 651 IPR001611 GO:0005515
Pste8g02058 1091 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 842 1055 - -
Pste8g02058 1091 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 29 204 - -
Pste8g02058 1091 SUPERFAMILY RNI-like 86 399 - -
Pste8g02058 1091 SUPERFAMILY RNI-like 298 654 - -
Pste8g02058 1091 Gene3D Ribonuclease Inhibitor 367 607 IPR032675 -
Pste8g02058 1091 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 739 841 - -
Pste8g02058 1091 ProSitePatterns Protein kinases ATP-binding region signature. 769 797 IPR017441 GO:0005524
Pste8g02058 1091 Gene3D Ribonuclease Inhibitor 608 694 IPR032675 -
Pste8g02058 1091 Gene3D Ribonuclease Inhibitor 29 184 IPR032675 -
Pste8g02058 1091 Gene3D Ribonuclease Inhibitor 185 285 IPR032675 -
Pste8g02058 1091 SUPERFAMILY Protein kinase-like (PK-like) 747 1038 IPR011009 -
Pste8g02058 1091 SMART LRR_typ_2 434 458 IPR003591 -
Pste8g02058 1091 SMART LRR_typ_2 338 362 IPR003591 -
Pste8g02058 1091 SMART LRR_typ_2 482 506 IPR003591 -
Pste8g02058 1091 SMART LRR_typ_2 554 577 IPR003591 -
Pste8g02058 1091 SMART LRR_typ_2 602 626 IPR003591 -
Pste8g02058 1091 SMART LRR_typ_2 121 144 IPR003591 -
Pste8g02058 1091 SMART LRR_typ_2 290 314 IPR003591 -
Pste8g02058 1091 SMART LRR_typ_2 145 169 IPR003591 -
Pste8g02058 1091 SMART LRR_typ_2 530 553 IPR003591 -
Pste8g02058 1091 SMART LRR_typ_2 627 650 IPR003591 -
Pste8g02058 1091 Gene3D Phosphorylase Kinase; domain 1 736 841 - -
Pste8g02058 1091 Pfam Protein tyrosine and serine/threonine kinase 767 1037 IPR001245 GO:0004672|GO:0006468
Pste8g02058 1091 Gene3D Ribonuclease Inhibitor 286 366 IPR032675 -
Pste8g02058 1091 Pfam Leucine Rich Repeat 609 627 IPR001611 GO:0005515
Pste8g02058 1091 Pfam Leucine Rich Repeat 412 434 IPR001611 GO:0005515
Pste8g02058 1091 ProSiteProfiles Protein kinase domain profile. 763 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste8g02058 1091 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Pste8g02058 1091 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 205 330 - -
Pste8g02058 1091 SMART serkin_6 763 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste8g02058 1091 Pfam Leucine rich repeat 99 158 IPR001611 GO:0005515
Pste8g02058 1091 Pfam Leucine rich repeat 532 591 IPR001611 GO:0005515
Pste8g02058 1091 Pfam Leucine rich repeat 292 351 IPR001611 GO:0005515
Pste8g02058 1091 ProSiteProfiles Leucine-rich repeat profile. 412 434 IPR001611 GO:0005515
Pste8g02058 1091 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 341 1040 - -
Pste8g02058 1091 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g02058 Pste-Chr8 16890767 16894422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g02058 28 1060 Receptor kinase-like Gene Family AT5G56040 48.236 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pste8g02058 PK_Tyr_Ser-Thr 8.9e-41 CL0016