Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g02052 TTGAAGTTCTAAAGCAGAGATTATATGGAGCATGGAAGGCCCTTATCTCAAGATGACCCTCAACCAAAACCAAGCCCTGATTCAAACCCACCACTTTCAACAAACAAAGGTGGTGCTCAACTTGGGATAGCAAGTGCAAATCTGGTGAAGATCATGCGGAAGGTTCTTCCACCACAAGCAAAACTCACTGAAGAAACCAAGCAAACAATGCAAGTTTGCGTTTCAGAGTTCATAAGTTTTGTCACTTGTGAGGCCAACGAGTTATGCCGTAAGGAGCGTCGCAAGATTGTTACAGCAGAAGACATAATATGTGCCATGGACTCGTTGGGTTTTGATGACTATGTGGAACCTCTCATTCTTTTCCTTGAACGATACCGTGACAAGAAGGATGAAACTCATAATGTTACTGGTTCTCATTTTTCGTCATCGTCATTGTCCTCGTCACGACAGACTCATGATGGTCATGATGGACCTAGTTTCTCTGGAGGTCCAAGCTTGTCTCAAGGGAAGCTTGATAACAATGATGAGACCAATGGTAATGACAACAATGACAAC 555 0.4324 MEHGRPLSQDDPQPKPSPDSNPPLSTNKGGAQLGIASANLVKIMRKVLPPQAKLTEETKQTMQVCVSEFISFVTCEANELCRKERRKIVTAEDIICAMDSLGFDDYVEPLILFLERYRDKKDETHNVTGSHFSSSSLSSSRQTHDGHDGPSFSGGPSLSQGKLDNNDETNGNDNNDN 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g02052 177 MobiDBLite consensus disorder prediction 1 31 - -
Pste8g02052 177 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 36 147 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pste8g02052 177 SUPERFAMILY Histone-fold 38 140 IPR009072 GO:0046982
Pste8g02052 177 MobiDBLite consensus disorder prediction 124 177 - -
Pste8g02052 177 Gene3D Histone, subunit A 25 147 IPR009072 GO:0046982
Pste8g02052 177 MobiDBLite consensus disorder prediction 128 177 - -
Pste8g02052 177 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Pste8g02052 177 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Pste8g02052 177 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
Pste8g02052 177 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 38 98 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g02052 Pste-Chr8 16799888 16807233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g02052 18 123 CCAAT-HAP3 Transcription Factor Family AT5G47670 48.246 9.93e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pste8g02052 CBFD_NFYB_HMF 7.4e-18 CL0012