Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g02047 ACAACTATAGCTGCGATTTCATGGGAGGCTGGGAAGCCGTTGGTGGTTGAAGATGTAGAGGTGGCACCACCACAAGCTGGAGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCACACTGATGTTTACTTTTGGGAAGCCAAGGGGCAGACTCCATTATTTCCTCGCATTTTTGGCCATGAAGCTGCAGGGATTGTGGAGAGTGTTGGTGAAGGTGTGACTCATCTGCAACCAGGAGACCATGCTCTCCCTGTGTTCACAGGAGAATGTGGTGATTGTGTACATTGTAAGTCAGAGGAGAGCAACATGTGTGAGCTACTAAGGATTAACACTGACAGGGGTGTCATGATCAATGATGGCCAAGCAAGGTTCTCTAAGAATGGAAAACCTATATACCATTTCTTGGGAACCTCTACATTTAGTGAGTACACTGTCATCCATGCTGGGTGTGTTGCAAAGATCAACCCTGCTGCTCCACTTGACAAAGTTTGTGTTCTCAGTTGTGGAATTTGCACAGGTTTTGGTGCTACTGTAAATGTGGCAAAACCAAAACCTGGCTCCTCTGTTGCTATTTTTGGACTTGGAGCTGTCGGTCTTGCGGCTGCCGAAGGGGCTAGGGTTTCAGGTGCTGCAAGAATCATTGGAGTTGATTTAATTTCTGAGCGATTTGAAGGAGCTAAGAAGTTTGGGGTTAATGAGTTTGTCAACCCAAAGGATCATAATAAACCTGTGCAAGAGGTAATTGCTGAAATGACCAACGGAGGTGTGGATCGAGCTGTTGAATGTACTGGTAGCATCCAGGCCATGATTTCTGCATTCGAATGTGTCCACGATGGTTGGGGTGTTGCTGTTCTTGTTGGAGTGCCAAGTAAAGATGATGCATTTAAAACTGCTCCTATCAACTTCCTTAACGAGAGAACTCTAAAGGGTACCTTCTATGGTAACTACAAACCACGCTCTGATCTTCCTTCTGTTGTGGAGAAGTACATGAATGGGGAGCTAGAGGTGGATAAATTCATCACTCACTCAGTTTCTTTCTCAGAGATCAACAAAGCATTTGAGCTCATGTTAACAGGACAGTCCATTAGGTGCATCATCAACATGCAAGCATAAGATGGATGAAATAGTTCATGACTCTGTTCAGGACAGGTCTTTGATTTGTTAAGAGAAATGGAGAGAGAATAAAAATTTTGTAGGCATTCCCCTACTTTAGGATTTTGATCGTATTTTTGTAGCTTTATTGTTGAAACTTATAGAGCATTTAGCTCTGTCACTTGATTGTTGAAACTTATAGGGCATCTAGCTCTGTCACTTGATTTGTGGTTTATGTTTTGATTGTTTCTATGATTTTACTTTTACATGAAAATAAAAATAATTGTATAACAGAAACCTTGGGTGCTCCAAAGGAAGAGAAATCAATTGTTC 1428 0.4244 TTIAAISWEAGKPLVVEDVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAAGIVESVGEGVTHLQPGDHALPVFTGECGDCVHCKSEESNMCELLRINTDRGVMINDGQARFSKNGKPIYHFLGTSTFSEYTVIHAGCVAKINPAAPLDKVCVLSCGICTGFGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARVSGAARIIGVDLISERFEGAKKFGVNEFVNPKDHNKPVQEVIAEMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPSKDDAFKTAPINFLNERTLKGTFYGNYKPRSDLPSVVEKYMNGELEVDKFITHSVSFSEINKAFELMLTGQSIRCIINMQA 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g02047 371 Pfam Zinc-binding dehydrogenase 197 323 IPR013149 -
Pste8g02047 371 Pfam Alcohol dehydrogenase GroES-like domain 27 154 IPR013154 -
Pste8g02047 371 SMART PKS_ER_names_mod 1 367 IPR020843 GO:0016491
Pste8g02047 371 SUPERFAMILY GroES-like 3 177 IPR011032 -
Pste8g02047 371 FunFam Alcohol dehydrogenase class-P 174 312 - -
Pste8g02047 371 PANTHER ALCOHOL DEHYDROGENASE 3 367 - -
Pste8g02047 371 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 60 74 IPR002328 GO:0008270|GO:0016491
Pste8g02047 371 SUPERFAMILY GroES-like 319 367 IPR011032 -
Pste8g02047 371 Gene3D - 174 312 - -
Pste8g02047 371 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 160 334 IPR036291 -
Pste8g02047 371 Gene3D - 10 361 - -
Pste8g02047 371 FunFam alcohol dehydrogenase 1-like isoform X1 10 173 - -
Pste8g02047 371 CDD alcohol_DH_plants 4 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g02047 Pste-Chr8 16710983 16713820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g02047 28 318 Monolignol Biosynthesis Gene Families AT1G72680 25.597 1.05e-13 69.7