Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g02039 ATGTCTAGGACACTAGTGCAGCCGATAGGGCAGAAGAGGCTAACAAATGTGGCAGTGGTGCGTCTTAAGAAGCATGGCATGCGCTTTGAAATTGCATGCTTCCCTAACACCGTCCTCTCTTGGCGTTCTGGCGTGGAAAAGGACCTGGATGAAGTGCTTCAGTCCCACACTGTTTATTCCAATGTTTCCAAAGGGGTTCTCGCCAAGTCCAAGGATTTAATTGCTGCTTTTGGCACCGATGACCACTCAAAAATATGCTTAGATATTTTAAAGAAAGGGGAACTTCAGGTAGCTGGAAAAGAGAGGGAATCAATGTTGTCAAGTCAGTTCAGGGATATTGCAACTATAGTAATGCACAAGACTTACAATCCTGAGACTCAGCGTCCTTATACTATCAGTATGATTGAACGCCTCATGCGAGAAATCCATTTTGCTGTTGATCCACACAACACCTCCAAGAAGCAGGCTCTGGAGTTAATTCAAGAGCTTCAAAAGCACTTCCCTATAAAACGGTGTCCGTTGAGAATTCGTGCTACTTCTTCAGAGGACCAAGTGCCTGAACTTTTAGAAAAGCTGAATGAATGGAATGCCACTGTTATTTCTAAAGAAGGATCTTCTGCTCAGTTATCAGTTATTTTTGAGTTGGAACCCGGTCTATATAAGGACTGTCATGACTTTGTTATGAATAAGATGCATGGAAGATTTGATGTTCTTGCACACTCTCTTTATGTGGAAGGGGATACCCATGTGGAACAATACAATGATTACGAGGATATACCTGCCGCGTTGCCCAAAGAAACTCGTGATTCTGTGCTAGAACTAAATGAGAAACTTCAAAAGCAAACAATTTCATCTACGAGTAGGCCTCCTGAGGGACAACAAAAGCAAAACAAGTGCAACACATGTAATGTATCTTTTGATGACGCCAAGCTGTATAGGGAACATCACAAGAGTGAGTGGCACAAACACAATATGAAGCGAAAAACAAGGCAACTCCCACCACTTACTGAGGAAGAGTGCATCGCAGACATGGAACTGGGTGACTCAAAATCTGATTTGAAGGATTATTCATTTTGAGATGATAATCACTGTTTTAGAGGTGGTGTTTGTTGGTAATCACACTATTGAAGGCTACTTAAGTCAATTTTGTCAGGAAAGTCTGGGATATAGTAAACTGCCCCCATGGAAATCATTATTTTGAAATCCTCAAGCACGCTCTTGTGTAAATTACAAAGACTATATACATTTTCATCTTTTTCTGTCATTATTTTAATGTACCGCCTATGTGCACCTAAAGATGTGCTTCATCAAGAATATATAGTTGAGGTTTATCAAAAGAGAAATGTTAGAGACAAGTTCAGTCACACATTCTTTATCATCAGGTGAAGTTTACTGCAAAACAACTTTTGATGAATTTTACACTTCATTTTTTTTTTTTTTTAATTTTGTAGTTTTCAATAAATTCTGTCCAATAGTAAAGTGTATGGTAGATTGTCTGTGG 1501 0.3951 MSRTLVQPIGQKRLTNVAVVRLKKHGMRFEIACFPNTVLSWRSGVEKDLDEVLQSHTVYSNVSKGVLAKSKDLIAAFGTDDHSKICLDILKKGELQVAGKERESMLSSQFRDIATIVMHKTYNPETQRPYTISMIERLMREIHFAVDPHNTSKKQALELIQELQKHFPIKRCPLRIRATSSEDQVPELLEKLNEWNATVISKEGSSAQLSVIFELEPGLYKDCHDFVMNKMHGRFDVLAHSLYVEGDTHVEQYNDYEDIPAALPKETRDSVLELNEKLQKQTISSTSRPPEGQQKQNKCNTCNVSFDDAKLYREHHKSEWHKHNMKRKTRQLPPLTEEECIADMELGDSKSDLKDYSF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g02039 358 FunFam SBDS, ribosome maturation factor 3 96 - -
Pste8g02039 358 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Pste8g02039 358 ProSitePatterns Zinc finger C2H2 type domain signature. 299 321 IPR013087 -
Pste8g02039 358 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 246 IPR039100 -
Pste8g02039 358 FunFam SBDS, ribosome maturation factor 100 172 - -
Pste8g02039 358 Gene3D - 174 251 - -
Pste8g02039 358 SUPERFAMILY beta-beta-alpha zinc fingers 291 344 IPR036236 -
Pste8g02039 358 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Pste8g02039 358 MobiDBLite consensus disorder prediction 279 299 - -
Pste8g02039 358 Gene3D Classic Zinc Finger 289 345 - -
Pste8g02039 358 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Pste8g02039 358 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Pste8g02039 358 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Pste8g02039 358 Gene3D - 1 96 IPR036786 -
Pste8g02039 358 Gene3D - 100 172 IPR037188 -
Pste8g02039 358 NCBIfam ribosome assembly factor SBDS 13 231 IPR002140 GO:0042256
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g02039 27 358 C2H2 Transcription Factor Family AT1G43860 59.130 2.00e-144 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste8g02039 SBDS_C 8.7e-27 CL0437