Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g02035 CCATGGCTAATTCTACGGCAGCTACAAAGGACATACCCAAGAAGTATCGTCGTCCTGTTAATCACTGGACCATAGTTGAGGATTCAAAACTCAGTCAAATGGTTGAACAACATGGCACCCGTGACTGGAGTTTAATAGCTGAGCATATAGAAGGAAGAACAGGAAAATGTTGCAGATCAAGGTGGGTTCATCATCTTGATCCTGGAGTTAACAGAAATCCCTTCACAAATGACGAAGAAGAAAAGCTAATTGTAGCTAGAGAGCTATATGGACCAAGGTGGGCAGCTATATCCAAGCTATTCAAGGGTAGAACTGATAAGGCCTTGATGAATCGTTGGCATGTTTTAATGAGGCGAAAGCAAAAGGAATCGAAGAAGAGAACCATACAATTACAAGATGATTCTAATGATTCAAACACTTCTTCATCTGGTGATAGTCATCACCAACAACCATGTTTGAGCACTGAACAAATTAGGGCACCTGCATCAATGTGTTCCAATGGTAATTGGTTGGGCTCTATGAAGTTTGGCTCCGTACCATCCTTTTCAGACGTTTTTCAAGTGGTGGATTCAACTATGGAAGAAGGGACCGGTCATTGTGGAGTAGTTAATGGTGTTGGTGAAGCAAGAAACAAAAGGGACTCTGTTGATAACTCATTCATGGATCTTAGGGCTTCTTCTTCCTCAAAGAATGTTCCTTTCTATGATTTTCTCGGGGTTGGTGTTGATGACAAGACTGCTAGAAGGAAACTCCACAGTCAAGACAATAATGGATTAGGGTTTAGTTTGCTGCCTTGTAATTGGTTCAGTCCAACTATGGGAGATGGTGACAGGGAACACATGGGAGGCATAAAAAGATTTCTAGAACTCATGATCAAATGTCAAATTGTTCGATTTAAGAACAATCTCTATCCTCCTGACCCTTTCTCAAGTTTTCATCTTCTCTGGGGTTTCTCTCTGCTGTGGTTCATAGCCATGGAAAATTCTTCAAAATTTTCTCTGGAAACAGCATATAGGAACCCTAGTCGTATTAATTACTGGCAGGTTGAGGAGGATATCAAGCTCAGAAGACTTGTTAACCAACATGGTGCCCATGACTGGAATTTAATTGCTAAGCATTTACAAGGAAGATCAGGAAAAAGCTGCAGATTAAGGTGGCGCAATCACCTTGATCCATCACTGAACAGAACTCCATTCACAAAGGAAGAAGATGAGAGGTTATTGGCAGCTCGTCAGATATATGGGTCAAGGTGGGCAGCCATAGCCCTTCTCTTCACAGGAAGAACCGACAATGCGTTGAAGAATCACTGGCATGTGTTGATGGCAAGAAAGAGAAGAGAATCAAAGCAGATAAACATGGAACAGAAGCTTATTGTTGATGATGCAGATGATGGAAATAAAACTTCAGATTCCAGCAATAGTGTTCCCAAGCAGAAGGGTGCAGTTCCATTCACCAATGATTGGATGAGCTCTGTCAAGTTTGGATGTTTTCCATCATATTGGAAGAGTTTTCCTGTGTTGAATTCAGCTTGGGAAGAGGGGAATGGTGTTTCTGGAGCAGTTAATGATGTTGCTGATGATGGAAGAATGAAGAGGGGTGTTTTTGGAAACTCAGTCACTGAGTTGGGTGCTTCTTCTTCTTCTTCACAAGATGATGTTGTTGAGTCAGATGTTAGAGGAACTAAAGAGGTTCTTTTCTTTGACTTTCTTGGTGTTGGTAACAAT 1724 0.4147 MANSTAATKDIPKKYRRPVNHWTIVEDSKLSQMVEQHGTRDWSLIAEHIEGRTGKCCRSRWVHHLDPGVNRNPFTNDEEEKLIVARELYGPRWAAISKLFKGRTDKALMNRWHVLMRRKQKESKKRTIQLQDDSNDSNTSSSGDSHHQQPCLSTEQIRAPASMCSNGNWLGSMKFGSVPSFSDVFQVVDSTMEEGTGHCGVVNGVGEARNKRDSVDNSFMDLRASSSSKNVPFYDFLGVGVDDKTARRKLHSQDNNGLGFSLLPCNWFSPTMGDGDREHMGGIKRFLELMIKCQIVRFKNNLYPPDPFSSFHLLWGFSLLWFIAMENSSKFSLETAYRNPSRINYWQVEEDIKLRRLVNQHGAHDWNLIAKHLQGRSGKSCRLRWRNHLDPSLNRTPFTKEEDERLLAARQIYGSRWAAIALLFTGRTDNALKNHWHVLMARKRRESKQINMEQKLIVDDADDGNKTSDSSNSVPKQKGAVPFTNDWMSSVKFGCFPSYWKSFPVLNSAWEEGNGVSGAVNDVADDGRMKRGVFGNSVTELGASSSSSQDDVVESDVRGTKEVLFFDFLGVGNN 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g02035 574 Gene3D - 344 394 - -
Pste8g02035 574 Gene3D - 20 70 - -
Pste8g02035 574 CDD SANT 73 116 IPR001005 -
Pste8g02035 574 Gene3D - 72 146 - -
Pste8g02035 574 Gene3D - 396 457 - -
Pste8g02035 574 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Pste8g02035 574 SMART sant 18 67 IPR001005 -
Pste8g02035 574 SMART sant 70 118 IPR001005 -
Pste8g02035 574 SMART sant 342 391 IPR001005 -
Pste8g02035 574 SMART sant 394 442 IPR001005 -
Pste8g02035 574 PANTHER MYB PROTEIN-RELATED 356 356 - -
Pste8g02035 574 SUPERFAMILY Homeodomain-like 344 436 IPR009057 -
Pste8g02035 574 FunFam Transcriptional activator Myb isoform A 20 71 - -
Pste8g02035 574 ProSiteProfiles Myb-like domain profile. 22 65 IPR001005 -
Pste8g02035 574 CDD SANT 346 389 IPR001005 -
Pste8g02035 574 MobiDBLite consensus disorder prediction 119 151 - -
Pste8g02035 574 CDD SANT 397 440 IPR001005 -
Pste8g02035 574 MobiDBLite consensus disorder prediction 132 151 - -
Pste8g02035 574 ProSiteProfiles Myb-like domain profile. 346 389 IPR001005 -
Pste8g02035 574 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Pste8g02035 574 ProSiteProfiles Myb-like domain profile. 390 440 IPR001005 -
Pste8g02035 574 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 390 444 IPR017930 -
Pste8g02035 574 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Pste8g02035 574 CDD SANT 22 65 IPR001005 -
Pste8g02035 574 MobiDBLite consensus disorder prediction 458 479 - -
Pste8g02035 574 FunFam Transcriptional activator Myb isoform A 344 394 - -
Pste8g02035 574 Pfam Myb-like DNA-binding domain 346 406 - -
Pste8g02035 574 Pfam Myb-like DNA-binding domain 22 82 - -
Pste8g02035 574 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 61 IPR017930 -
Pste8g02035 574 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 346 389 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g02035 Pste-Chr8 16546999 16560585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g02035 345 573 MYB Transcription Factor Family AT1G17950 39.669 1.73e-42 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste8g02035 Myb_DNA-bind_6 6.3e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g02035 8 16546999 16560585 Pste8g02035 8 16546999 16560585 ECH