LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste8g02020	ATGAAAAACTTGCAACTGAGCTGGGGTTTAATGGTTGCATTAGCCCTTGTAGTAGTAGCACCTGCTACCCTTTCTTCTGCACCACCACCAACCCTGGCCCAACCTGGCTGCAAATCCACTTGTGGGAAGATAACAATTCCATATCCATTCGGCATAGGCAACCCATCTGAACCCAAATCCTGTTTCTCAGAGAAAAAATATCGTCTCACCTGCAAAAATGATGACTCCACATTATATTACGGTGACACAAATGTTTCAATTTCAAACATAAACCTACAAAGCCATCAAATGGACCTATTGTTCTACGTTGCATCGCTTTGCCACAATGAAAGTGGAGGCCGACTCCCCGATAAACACTCCACTCTTATTCTCAGTGCTGATTTCACCATCTCAAGTAAGGAAAACAAGTTACTAACTGTTGGAACAGATAGCTATGGCTTTGTCAAAAGTTTCTTCGACGGGGAGTCATATTCAACTGGGTGCCTAACCAGCTCTGAAGGCTATAAAAGATCCAAAATGGAACATGCTCAGAGTAGTGCAGACTATGCGTGCAAGGAGAATAGCAAATGTGACGACAAGGACAGTGATCATGGTTACAGATGCATATGTAACGATGGATATGAAGGAAATCCTTATCTTGGCTGCTCAGACATTGACGAATGCATGAAACAAAATCATACATGCGTAAGTGATAAAAATTGTAAGAACAACAATGGAAGTTACACATGTTCCTGTCGTAAATGGCAATCCGGAAATGGAAGAAAGGAAGGAGGCTGCAATGTGCATCCTATGGTTATCGTTGGAGCCGTAGCAGGATTTGTTATTTTATTTCTGGGGAGTGTTATACCATACGTAATATACCAAAAAACAGAGCTCAACAAATTAAAGAAGGAAAACTTTCAGCAGAATGGTGGTCCTTTGTTGCAAGACCTCCAAAAAGAAAAGCACTTCAAAAGTACGAAAATTTTCACAGAAGAAGAATTACGGAATGCCACCCTCGACTTTAATCATACCAATAAAATTGACGGAGAAGGTTCTGCTGAAGTTTACAGAGGATATCTAGATAATGCAACCGTAGCTATTAAGAAGTCCAAAATAGTTGATAATGACAACCGAAGGCAACAATTCATTAAGGAGGTGGTTGTTCTATCACTTATCAATCATAAGAATGTGGTTAAATACTTGGGATGTTGTTTAGAGACAAAAGTTCCTTTCCTTGTCTATGAATTTGTTAATAATGGCACCCTTTTTTAATTTTATACACACTCAAAAAGATGTGAATGCTACAACTTGGACAACTCGTGTAAAGATAGCTGCAGATGTAGCTAGAGGTCTAGTATATTTGCACTCAGAAGCCTTAGATGATGAACCTATTGTACACAAGAAATGTCAAGACTTCTAACATCCTCTTGGATAGCAATTACACAGCCAAATTGTTTAATTTGGGAGCTTCAACATTCACTACACCTGACCAAAATGAATTATCCCCAATTGTGCAAGAAACTGCTGATTATTATTTAGATCCAGTGCAAAGAACCGCATCAATTTGAGAAAAAATGATGTTTATAGCTTTGGAATAGTGCTTGTAGAAGCTATTAACAGGACAACAAAAAAAGAACATGCTGACCACATTCTATCTAGCAGCAAAGAGAATCTTCTGGAGGTAGTTCAAGAGGGCCTTTTGAATGAAAAAATAAAAACAGATTGAAAAGGTTGCTATTCTTGCGCAAAGTGCTTGAACCAGTATAGGAAAGGAAAGGCCTAGCATGAAGGTTGTGGTAAGCGAGTTGGATAAGATCACATCGATTAGCACAGACCCAAATTTAATGGAGCCAAAACCTAATTATGAGCGTGGTGATAGCGGTAGTCATAAAAAGGCAATGATGACATTGAGGGTCAGTACAGCTACTTTGAATTATGGAAGATGATTATGGCATGGTAGCTCACAATCCAAATCTATATTTAAGTATCGTTATAATAAGGTTTTGTAACAAATTAGTTTTTAGCAGTGTGTATGCATGAATATTTTCTATTACGATCATGAAGGGTTTGTGTGGTAAATGTTGTAAAATAAAACTCTATTTAGGGAGAATTTATCCGAGGAGGGTTGTTGGAAATGATTTATAATCGTGTCTTTGGATCTTTGTAGTGAGGAATAGCAAATATGGTTTGTTTTTCTTGCATTTGGTCGATCAATTTGGAAAGCTAGGAAAGTTGTTCAATATAGTAATTGAGAATACAAAACTTCTAACATAGAACTGGA	2263	0.3791	MKNLQLSWGLMVALALVVVAPATLSSAPPPTLAQPGCKSTCGKITIPYPFGIGNPSEPKSCFSEKKYRLTCKNDDSTLYYGDTNVSISNINLQSHQMDLLFYVASLCHNESGGRLPDKHSTLILSADFTISSKENKLLTVGTDSYGFVKSFFDGESYSTGCLTSSEGYKRSKMEHAQSSADYACKENSKCDDKDSDHGYRCICNDGYEGNPYLGCSDIDECMKQNHTCVSDKNCKNNNGSYTCSCRKWQSGNGRKEGGCNVHPMVIVGAVAGFVILFLGSVIPYVIYQKTELNKLKKENFQQNGGPLLQDLQKEKHFKSTKIFTEEELRNATLDFNHTNKIDGEGSAEVYRGYLDNATVAIKKSKIVDNDNRRQQFIKEVVVLSLINHKNVVKYLGCCLETKVPFLVYEFVNNGTLF	417

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste8g02020	417	Gene3D	Phosphorylase Kinase; domain 1	307	410	-	-
	Pste8g02020	417	Pfam	Protein tyrosine and serine/threonine kinase	347	416	IPR001245	GO:0004672\|GO:0006468
	Pste8g02020	417	Pfam	Calcium-binding EGF domain	217	256	IPR001881	GO:0005509
	Pste8g02020	417	ProSitePatterns	Aspartic acid and asparagine hydroxylation site.	234	245	IPR000152	-
	Pste8g02020	417	FunFam	Fibrillin 2	212	256	-	-
	Pste8g02020	417	SMART	egfca_6	217	260	IPR001881	GO:0005509
	Pste8g02020	417	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	25	417	IPR045274	GO:0007166
	Pste8g02020	417	SUPERFAMILY	Growth factor receptor domain	157	250	IPR009030	-
	Pste8g02020	417	ProSitePatterns	Calcium-binding EGF-like domain signature.	217	243	IPR018097	GO:0005509
	Pste8g02020	417	ProSiteProfiles	Protein kinase domain profile.	335	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste8g02020	417	ProSitePatterns	EGF-like domain signature 2.	201	215	IPR000742	-
	Pste8g02020	417	Gene3D	Laminin	168	219	-	-
	Pste8g02020	417	CDD	EGF_CA	217	246	-	-
	Pste8g02020	417	Pfam	Wall-associated receptor kinase galacturonan-binding	37	98	IPR025287	GO:0030247
	Pste8g02020	417	SUPERFAMILY	Protein kinase-like (PK-like)	316	417	IPR011009	-
	Pste8g02020	417	Gene3D	Laminin	220	257	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste8g02020	Pste-Chr8	16241865	16244914	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste8g02020	184	417	Receptor kinase-like Gene Family	AT1G21230	42.629	1.16e-46	169

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Pste8g02020		PK_Tyr_Ser-Thr	6e-11	CL0016