Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g02018 GTGAAACCCTGAAGCCACTAGCCAGCACAAACAACTACAAAATACTCCCAGCAATGAAAAACTTGCAACTGAGCTGGCGTCTAATGTTTGCATTAGCCCTTGTAATAGTAGCACCTGCTACCCTTTCTTCTGCACCACCAGACCCGATCCTAGCTGGCTGCAATTCCACTTGTGGAAATATCCAAATTCCATATCCATTCGGTGTAGGCAACTCATCTGAACCCAATTCAAAACCCTGTTACTTGCAGGAAAAATTTAATCTCACCTGCAAGGATGAGTCCACATTATATTACGGTGACGTAAAAGTTTCAAACATAAGCCTAGAAAGTCATAATATTGACGTACTGTTCTACGTGGCATGGCTTTGCCACTATGTAAATGGAACCGCACAGCCCAATCAGTACTCCACTCTTGCTCTCGGAAATTTCAGCATCTCGAGCAAGGAAAACAAGTTACTAACTGTTGGAACAGATAGCTATGGCTATGTCAATAGTTTCTTCAAGGGGGAGTCATATTCAACTGGGTGCCTAACAAGCTCTCATGGCAGTAGCAAGATCGAAAATGGATCATGCTCGGGTATAGCGTGTTGCCAAGTGGATATTCCTCCGGGAATGAGGAACATCTCTGTATGGGTAAAAGATCTCAATAATCGACAGAAAAATGCTGGAAACTGCAGCTATTCCTTTGTGGTCAAGAATGGCATGTATAATTTTTCTACCACTCACTTACAGAGTTTCCCAAACACGACCCTCCCCTTGGCTCTTGATTGGACTGTTGGAGACAAAAACTGCAGTTCTATTGACAAAAATGGAGGCGACTATGCATGCAAGAATAATGCCCGATGTGACGACAAGGACAGTGATTATGGTTACAGATGCATATGTAAAGATGGCTATCAAGGAAACCCTTATCTTGGCTGCACAGACATTGACGAATGCATGACAGCAAAGCATACATGCATAAGCCATAAAAATTGTGAGAACACCGATGGAAATTACACATGTTTCTGTCGCACATGGCAATCAGGAAATGGAAGAAGGGAAGGAGGCTGCAACGTGCATCCCCTGGTTATCGTTGGAGCTGTAGTAGGATTTGTGATTCTATTTTTGGGGAGTGTCATACCATACATAATATACCAAAAAAGGAAGCTCAACAAATTAAGAAAGAAACACTTTCAGCAGAATGGTGGACTTCTTTTGCTACAAGAACTCCAAACAAAGAATCACTCCAACATTCTGAGAATTTTCGGAGAAGAAGAACTACAAGAGGCCACCCTGGACTTTGATAAGATAAACATCATTGATGAAAAAGGTTCTGGTACAGTTTTCAAAGGATATATATATGATAATGATAAAAAAACTGGAAAAAAAACTGTGGCTATCAAGAAGTCCAAAATAGTAGTTGATAACAAGATTAGCAACCTAAAGCAACAATTTATTAACGAGATAATTGTTCTATCAGGTATCAATCATAAAAACTTAGTTAAACTCTTAGGATGTTGTTTAGATACACAAGTTCCTTTACTAGTCTATGAGTTTGTTAATAATGGTACCCTTTTTGATTTTATACACAAAAGAAAGGTGCATGATACAACTTGGACAACTCGTTTAAAGATAGCCGCAGAGGTAGCCGGAGCTCTATTTTATTTGCACTCACAAGCCGCACAACCTATTATACACAGAAATGTCAAAACTTCTAACATTCTTTTAGATGACAATGACACGGCCAAATTGTCCAATTTTGGAGCTTCAACATTCACTACACTTGATCAAAATGAATCATCCACAATTTCGCAAGAAACTGGTGATATTTATTTAGATCCAGAGTACAAAGAAAAGCATCAGTTTACAGAAAAAAGTGATGTTTATAGCTTTGGAATAGTGCTTGACAACAAAAAAAAGAACATGCTGACCACATTCTATCTAGCAAAGAAAGAGAATCTTACGGAGATTGAAAAGGTTGCTATTCTTGCTGCAAAGTGCTTGAACCGTATAGGAAAGGAAAGGCCTAGCATGAAGGTTGTAGTAATCGAGTTGGATAAGATCACATCGATTAGCACAGACCCAAATTTAATGGAGCCAAAACCTAATTATGAGCGTGGTGATAGCGGTAGTCATAAAAAGGCAATGACAAGATTGAGGGTCGTACCACTACTT 2156 0.3938 MKNLQLSWRLMFALALVIVAPATLSSAPPDPILAGCNSTCGNIQIPYPFGVGNSSEPNSKPCYLQEKFNLTCKDESTLYYGDVKVSNISLESHNIDVLFYVAWLCHYVNGTAQPNQYSTLALGNFSISSKENKLLTVGTDSYGYVNSFFKGESYSTGCLTSSHGSSKIENGSCSGIACCQVDIPPGMRNISVWVKDLNNRQKNAGNCSYSFVVKNGMYNFSTTHLQSFPNTTLPLALDWTVGDKNCSSIDKNGGDYACKNNARCDDKDSDYGYRCICKDGYQGNPYLGCTDIDECMTAKHTCISHKNCENTDGNYTCFCRTWQSGNGRREGGCNVHPLVIVGAVVGFVILFLGSVIPYIIYQKRKLNKLRKKHFQQNGGLLLLQELQTKNHSNILRIFGEEELQEATLDFDKINIIDEKGSGTVFKGYIYDNDKKTGKKTVAIKKSKIVVDNKISNLKQQFINEIIVLSGINHKNLVKLLGCCLDTQVPLLVYEFVNNGTLFDFIHKRKVHDTTWTTRLKIAAEVAGALFYLHSQAAQPIIHRNVKTSNILLDDNDTAKLSNFGASTFTTLDQNESSTISQETGDIYLDPEYKEKHQFTEKSDVYSFGIVLDNKKKNMLTTFYLAKKENLTEIEKVAILAAKCLNRIGKERPSMKVVVIELDKITSISTDPNLMEPKPNYERGDSGSHKKAMTRLRVVPLL 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g02018 701 SMART egfca_6 243 290 IPR001881 GO:0005509
Pste8g02018 701 SMART egfca_6 291 334 IPR001881 GO:0005509
Pste8g02018 701 Gene3D Laminin 244 332 - -
Pste8g02018 701 Gene3D Transferase(Phosphotransferase) domain 1 496 675 - -
Pste8g02018 701 SMART egf_5 245 290 IPR000742 -
Pste8g02018 701 SMART egf_5 294 334 IPR000742 -
Pste8g02018 701 SUPERFAMILY Protein kinase-like (PK-like) 390 658 IPR011009 -
Pste8g02018 701 Pfam Calcium-binding EGF domain 291 327 IPR001881 GO:0005509
Pste8g02018 701 SUPERFAMILY EGF/Laminin 291 325 - -
Pste8g02018 701 CDD EGF 258 286 - -
Pste8g02018 701 Pfam Wall-associated receptor kinase galacturonan-binding 36 97 IPR025287 GO:0030247
Pste8g02018 701 Pfam Wall-associated kinase 171 278 IPR013695 GO:0004674|GO:0016020
Pste8g02018 701 ProSitePatterns Calcium-binding EGF-like domain signature. 291 317 IPR018097 GO:0005509
Pste8g02018 701 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 34 665 IPR045274 GO:0007166
Pste8g02018 701 FunFam Fibrillin 2 286 330 - -
Pste8g02018 701 SMART serkin_6 410 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste8g02018 701 CDD EGF_CA 291 320 - -
Pste8g02018 701 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 308 319 IPR000152 -
Pste8g02018 701 ProSiteProfiles Protein kinase domain profile. 410 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste8g02018 701 Gene3D Phosphorylase Kinase; domain 1 382 495 - -
Pste8g02018 701 Pfam Protein tyrosine and serine/threonine kinase 421 611 IPR001245 GO:0004672|GO:0006468
Pste8g02018 701 ProSiteProfiles EGF-like domain profile. 250 290 IPR000742 -
Pste8g02018 701 ProSitePatterns EGF-like domain signature 2. 275 289 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g02018 Pste-Chr8 16220213 16222937 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g02018 36 688 Receptor kinase-like Gene Family AT1G21250 37.021 1.01e-129 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Pste8g02018 PK_Tyr_Ser-Thr 1.2e-37 CL0016