Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01996 AAAAAGGAGAAAAGAAATGACCAGCCAAAGAAAGCAAAAGCGGTTGTATTGTATTTTCAAAAACAGAAGAAGGATAAGAAAGAGAGCTTCTTCTTCTACTGTTTCATCTTCCCAATATCTTCACCACTCTCTCTCATTTCTTCAAATTCTCATTACTTAAGCTTATTCCTCAAACTTCATTACCCTATTGTTGCGCTTGAAGTTGGTGAGGGGCAAATCTTGAGAAATTTTGGATCTATGGAAGCTGAGGATGGAAGTAGCAATGGTGATAACGGTGAATGGGGTGGATCGGGTCTAAGGTTGGATTCTGAAGATGGAGATGGGGGGAGAATTCAAGGTGGAAATGATGTTGTGGAAGGGGAGGAGTGGGGCTTGAAGGATGGAGCTGTAAATAATGGGGTGGCTGTTGAAGGTGAAGAAGTTGAGGGTTTGAAGAAGGAAGCTGTAGATAATGGGGTGGAAATTGAAGTTGGAAATGGTGATGTTAGAGGTGAAGAAGTTTGGGGCTTGCAGCATGGAGCTGTAAATAATGGGGTGACAATTGAAGGAGGAAATGGTGTAGTTGAGAGTGAAGTAGTTTGGGGTTTGAAGAATGGAACTGTAAATAGTGGGTTGGCAGTTGCAGGTGGAAATGGTGTTGCTGAAGGTGAAGAAGTTCAGGACATGAAGAATGAAACTGTAAATAATGAGATGGCAATAGATGGTGGAAATGGTGTTGCTGATGGCAAAGTGTGTGCCTTGAAGAATGGAGGTATAAATAGTGGGGTGGCAATTGCTGATGGGAATGGTGTAGCTGAAGATAAAGAAGTTTTAAGCTCAAAGAATGAAGTTATACATAATGGAGTGGCAATTGCTGATGGGAATGGAGTTGCTGAAGATGAAGAGGCTTTGAGATCAAAGAATGAAGTTATAGATTATGGGGTCTCAATTGCTAATGGGAATGGTGTCGCTGAAGGTGGAGAAGTTGAAGGCTCAAAGAATGAAGCTGTAAATAATGAGATGGTAGTTGCAGAGGAGAATGGTGTTCCTGAGGGTCAAGAGGATCACTGCTTGAAGGATAGAATGGTAGATAATGAAGTGGCAAGATCCGATGGTTTTGGCGTTGGTGAAGGGAACTTTGGTGCAGTTGAATGTTTACGAACATACAAGAGGCGCAAACATGTAAAGTTGTGTTCAGAATTTAAAGTCCAGGAGAACAGCAGAAAACATATGGAAGCTGCAAGTCACCTGTCGGTTCAGGAAGCTTTCAAAACTGACAAGGATGGTCAAGAATGCTCTCAGCAATTAGAGTGTTTGCAGTACAAATTACAGAGTGAAGCTAATGGACATGAAAATGTTGTGCATAATGGATTTTCTAGTGATTCAAATGGTCGTGATGTAACCGAAAGGTGTCAGCACGTGTTCCACGATATCTTAGCCTCTGAGAAGTTCAGTTCATTATGTAATGTGCTACTTGAAAATTTCCAAGGAATGAAACCTGAAACTATATTTGACTTTAGTGTGATAAACTCAAGGATGAAACGGCAAGCTTATGAACAATCGCCTACACTTTTCTTATCAGATGTTCAACAGGTTTGGCAAAAGTTTCAAGATACTGGAAATCAGATTGTTGCTATAGCCAAGAGCCTCTCCAACATGTCAAAAGCTTCCTTCTGTAAGCAGGTGGGAATTTCAACACAGAGCTCCTTTGAAGATGAAAAGCAAGTGGAATCCCTCAATCACATGAAACCAGAGCAGACAGTAGAATGTAATACATACAAAGTTGGCACTTGCAGGCATTGTGGAGAGAAAGCAGATGGTACAGACTGTTTGGTTTGTGATTCATGTGAAGAGATGTATCATCTGTCCTGCATTGAGCCTTCTGTGAAAGAAATACCTCGCAAAAGCTGGTTCTGTACCAATTGTACTGCTGGTGGAATTGGATGTCGACATGAGAAGTGTGTGGTATGTGAACGGTTGAATTTCCCAAAGAGCCTGGATGACATTGTTGGCGAGGAAAGCTTCCCTCCAAATGAGGAAACACTGAAGGAATTGGAAGAGAATTCAAATTGTACTTACGATGGGATTCAAGTTTCCACAGGTGAGAGAAAACCATCTAACTGCAAAATTTGTAACATGGTGGTGGATGGTCAAAAAATGAAAATCTGTGGTCACTCTTACTGTCCCAGTAAATACTACCATGTAAGGTGTTTGTCAAGCAAGCAGCTTAAGTCATATGGTCATTGTTGGTATTGCCCTTCTTGCATATGCCAAGTTTGCCTCACTGACAAAGATGATATTAAGATCGTACTCTGTGATGGCTGTGATCATGCATACCACATCTACTGTATGAAACCTCCTCGGAATTCTATTCCAAGAGGGAGATGGTTCTGCATAAAATGTGATGCAGGGATACAAGCAATACGCCAGGCAAGAAAGGCATATGAGAGTAACAAAGGAAAAATTGGTCAGGATGATTCAAAGCCAACTGAAGATGTTAACAATAAATGGAACAAGAAGCGAGGACGGGAATCAGACAAAGTTGGAGGAATGGATATGCTTATAAATGCAGCAAATACTCTGAATTCTGAAGAGGACATCAACGCAATCCAGATTGACTCAAAGAAAACATTAACATGAGGGTGTATGTGCTAATTGCTAATACCTAATGTTTTATATTTCTTGCATCTGTTTTAGATAACTGATTTTGTTAGGTTGTAAAACTATGGTAGATTTTGCTGACTTTTGGATACATGCTGTTGGAGAGAAAGGATTATAGAGGCCAAAGAGCAAAAAGCATCAATAGAAACTCTGATAAGTGAAGTATGGGATATTTTGCAGGTCAGGTTGTAATATATGTGGTCAATATCTTATTTAATTGGCTGCTTTGCTCCATGCAGAATATAATGTTTTGGATTCTCG 2901 0.404 KKEKRNDQPKKAKAVVLYFQKQKKDKKESFFFYCFIFPISSPLSLISSNSHYLSLFLKLHYPIVALEVGEGQILRNFGSMEAEDGSSNGDNGEWGGSGLRLDSEDGDGGRIQGGNDVVEGEEWGLKDGAVNNGVAVEGEEVEGLKKEAVDNGVEIEVGNGDVRGEEVWGLQHGAVNNGVTIEGGNGVVESEVVWGLKNGTVNSGLAVAGGNGVAEGEEVQDMKNETVNNEMAIDGGNGVADGKVCALKNGGINSGVAIADGNGVAEDKEVLSSKNEVIHNGVAIADGNGVAEDEEALRSKNEVIDYGVSIANGNGVAEGGEVEGSKNEAVNNEMVVAEENGVPEGQEDHCLKDRMVDNEVARSDGFGVGEGNFGAVECLRTYKRRKHVKLCSEFKVQENSRKHMEAASHLSVQEAFKTDKDGQECSQQLECLQYKLQSEANGHENVVHNGFSSDSNGRDVTERCQHVFHDILASEKFSSLCNVLLENFQGMKPETIFDFSVINSRMKRQAYEQSPTLFLSDVQQVWQKFQDTGNQIVAIAKSLSNMSKASFCKQVGISTQSSFEDEKQVESLNHMKPEQTVECNTYKVGTCRHCGEKADGTDCLVCDSCEEMYHLSCIEPSVKEIPRKSWFCTNCTAGGIGCRHEKCVVCERLNFPKSLDDIVGEESFPPNEETLKELEENSNCTYDGIQVSTGERKPSNCKICNMVVDGQKMKICGHSYCPSKYYHVRCLSSKQLKSYGHCWYCPSCICQVCLTDKDDIKIVLCDGCDHAYHIYCMKPPRNSIPRGRWFCIKCDAGIQAIRQARKAYESNKGKIGQDDSKPTEDVNNKWNKKRGRESDKVGGMDMLINAANTLNSEEDINAIQIDSKKTLT 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01996 872 ProSiteProfiles Zinc finger PHD-type profile. 588 638 IPR019787 -
Pste8g01996 872 SMART PHD_3 590 636 IPR001965 -
Pste8g01996 872 SMART PHD_3 752 795 IPR001965 -
Pste8g01996 872 SMART PHD_3 700 749 IPR001965 -
Pste8g01996 872 MobiDBLite consensus disorder prediction 81 117 - -
Pste8g01996 872 SUPERFAMILY FYVE/PHD zinc finger 698 748 IPR011011 -
Pste8g01996 872 Pfam PHD-finger 749 795 IPR019787 -
Pste8g01996 872 Pfam PHD-finger 591 636 IPR019787 -
Pste8g01996 872 FunFam PHD finger protein EHD3 isoform A 482 639 - -
Pste8g01996 872 MobiDBLite consensus disorder prediction 811 838 - -
Pste8g01996 872 Gene3D - 476 638 - -
Pste8g01996 872 SUPERFAMILY FYVE/PHD zinc finger 749 800 IPR011011 -
Pste8g01996 872 ProSitePatterns Zinc finger PHD-type signature. 591 635 IPR019786 -
Pste8g01996 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 679 800 IPR013083 -
Pste8g01996 872 SUPERFAMILY FYVE/PHD zinc finger 572 636 IPR011011 -
Pste8g01996 872 ProSiteProfiles Zinc finger PHD-type profile. 747 797 IPR019787 -
Pste8g01996 872 PANTHER OS02G0192300 PROTEIN 531 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01996 Pste-Chr8 15849288 15862458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01996 749 812 C2H2 Transcription Factor Family AT3G01460 48.438 2.56e-13 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste8g01996 PHD 3.4e-12 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01996 8 15849288 15862458 Pste8g01996 8 15849288 15862458 ECH
Pste8g01996 8 15849288 15862458 Pste2g03230 2 32164078 32171373 PCT