LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste8g01984	CAACAAATATGTGCTAGCAACAAGAAGCAAGAACATGGTTGTGACCCTTCTTCCTGTGGCAAGATCAGCAACATAACATATCCATTTCGATTGAAAGGAGACCCACAAGGCTGTGGAGACAGCAGGTATGAACTAAGTTGTGAAAATAATGTAACGGTGGTACATCTGTATTCTGGAAAATATCATGTGCAGGCAATAAACTACGACAATTTCACAATCCGAGTGGTTGATCCTGGAATTCAACCTTCCAATTACTCAACCCTTCCTCGATATTTCTTTTCTCCACTCAATTTCAGTGATTTGTACTACCGAACCGATTTTAGATATATAGTTTTCATGAATTGTAGCCATGGAGTGAGTGAGAATGGCAGGTATGTGGATACAGCTCCCTACATCAATTGGGAGTCCAAAGGGCACCACATATACGCTATTGCTGGTGACTTAAAAGCAAGGGACATTGAAGTTGGTTGTAAAGTAAAGCTGGTTGCTGCCACATCTTGGTGGGGTTTGGACACAAATAAATATTCCTACTCATACACTGCCATGCACATGGCTCTACTCTATGGATTTCAGATTTCATCGGTGCATCTTGCCTGTGTGGATCTTTGTGAAGAAAGTATGTGCTATTTCGACCCTTCCAGCCAGACCCTTCAATGCTGGCCCCAGCTGAAAGTTATTGCTGATGTCTTGACAGGAATATTTAAAATAGTAGACGGGCCAAGACTAAAAGCTGAAAGTGATTACACTGTGTATGATTTAGCATTTATTTCCCTGGGACAGTGTGTTCTACCATACTTGGCAGGCAGGTATTTGTTAGGAATGACATTGTTTATTGCTCTTCTGATATACAAACGGAGAAACAAACATTTGTCAATGTATGAAAATATCGAAAATTATTTGGAGCAAAATAACTTGATGCCTATTAGATACTCATACAAGGAAATTAAGAATATGGCTAAGGGTTTTCAAGACAAACTCGGGAAAGGAGGTTTTGGCTCTGTGTTTAAGGGAAGGCTACGAAGTGGGCCTATTGTGGCAATAAAAATGTTGGACAAATCAAAAGGTAATGGACAAGATTTTATCAATGAAGTTGCAACAATTGGAAGAATACATCATCAAAATATAGTACAATTAATTGGATATTGTGTTGAGGGTAAAAAACGTGCTCTTGTTTATGATTTCATGTCCAATGGATCTCTGGATAAATTTCTTTTTTTCAAAGATGGAGGTATGCATCTAACCTATGATAAAATATATAATATAGCAATTGGAGTAGCTCGTGGAATTGCTTATCTCCACTGTGGATGTGAGATGCAAATTTTACATTTTGATATCAAACCACACAATATCTTACTTGACGAAAATTTCATCCCAAAGGTATCTGATTTTGGATTGGCAAAGTTATATCCAATAGATAACAATATTGTCACCATAACAGCAGCAAGAGGGACAATTGGATATATGGCTCCAGAATTGTTTTATAAAAATATTGGAAGAACATCCCAAAAGGCTGATGTTTACAGCTTTGGAATGCTTTTGATGGAAATGGCAAGTAAGAGAAAAAACCTTAATCCTCTTGCAGAACACTCAAGTCAACTTTACTTTCCCTTGTGGGTATATGGTCAACTTGAAAAAGAGAAAGATATAGAAATGGAAGACGGTTCTTTGGAGGAAAAGCAAATAGCAAAAAAGTTGATCATAATTGCTCTTTGGTGTATACAATTAAAACCAGATGATCGTCCCTCAATGAATAAAGTAATAGAGATGCTTGAAGGAGAAATTGAAAGCATAGAAATGCCCCCTAAACCTTCTTTATATCCAAATGAAATGGCAATAGAAGATCAAAGTAGTGACTTCATTAGTTCTTCTAGTTATTCCACA	1881	0.3721	QQICASNKKQEHGCDPSSCGKISNITYPFRLKGDPQGCGDSRYELSCENNVTVVHLYSGKYHVQAINYDNFTIRVVDPGIQPSNYSTLPRYFFSPLNFSDLYYRTDFRYIVFMNCSHGVSENGRYVDTAPYINWESKGHHIYAIAGDLKARDIEVGCKVKLVAATSWWGLDTNKYSYSYTAMHMALLYGFQISSVHLACVDLCEESMCYFDPSSQTLQCWPQLKVIADVLTGIFKIVDGPRLKAESDYTVYDLAFISLGQCVLPYLAGRYLLGMTLFIALLIYKRRNKHLSMYENIENYLEQNNLMPIRYSYKEIKNMAKGFQDKLGKGGFGSVFKGRLRSGPIVAIKMLDKSKGNGQDFINEVATIGRIHHQNIVQLIGYCVEGKKRALVYDFMSNGSLDKFLFFKDGGMHLTYDKIYNIAIGVARGIAYLHCGCEMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNNIVTITAARGTIGYMAPELFYKNIGRTSQKADVYSFGMLLMEMASKRKNLNPLAEHSSQLYFPLWVYGQLEKEKDIEMEDGSLEEKQIAKKLIIIALWCIQLKPDDRPSMNKVIEMLEGEIESIEMPPKPSLYPNEMAIEDQSSDFISSSSYST	627

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste8g01984	627	Pfam	Wall-associated receptor kinase galacturonan-binding	14	77	IPR025287	GO:0030247
	Pste8g01984	627	SUPERFAMILY	Protein kinase-like (PK-like)	305	591	IPR011009	-
	Pste8g01984	627	FunFam	PR5-like receptor kinase	395	602	-	-
	Pste8g01984	627	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	440	452	IPR008271	GO:0004672\|GO:0006468
	Pste8g01984	627	Gene3D	Phosphorylase Kinase; domain 1	293	394	-	-
	Pste8g01984	627	FunFam	serine/threonine-protein kinase PBS1-like	288	394	-	-
	Pste8g01984	627	Pfam	Protein kinase domain	324	588	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste8g01984	627	SMART	serkin_6	320	590	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste8g01984	627	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	293	610	IPR045874	GO:0004672
	Pste8g01984	627	Gene3D	Transferase(Phosphotransferase) domain 1	395	605	-	-
	Pste8g01984	627	ProSitePatterns	Protein kinases ATP-binding region signature.	326	348	IPR017441	GO:0005524
	Pste8g01984	627	ProSiteProfiles	Protein kinase domain profile.	320	594	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste8g01984	Pste-Chr8	15643044	15651206	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste8g01984	3	606	Receptor kinase-like Gene Family	AT5G38260	35.612	1.07e-112	350

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Pste8g01984		Pkinase	2.1e-47	CL0016