Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01980 ACGCACTTCACTCCATGGAAGGGAGCACTTCATAAATCCACAACACATCCACACTCTGAATTTCCCGCGTTTTTTTTACACCGCGTTCTTCCGCATTCAAACTCATTTCACAAATCGTAACAAACACAATCAAATCAAATCTCACCCCAACCTTCTTCTTCCTCTCCCACTCGATTTCAATTTCCCCCATACCTGCTACCACAACAACTTCCGAAGCTTAATTCGATACAAATAACTCCAAATCGAAGTCGAAGAAGAAGACGAAGATGCTGAAGACGAAGGCGTTCCACGGTGCGAACGTGTTCATGTCGCGAAACCTCGTGCCGCCGGAAGTCTTCGACGCGCTACACGACGCCGTCAAAAATAGCGGCGCTCAGCTCCACCTCTGCTGCGATCCTTCCCGTAACGGCCCCAACGATTACCACGTCATTTCTTCCAGCAAACACGAAAAGTTCGATGATCTTAAATCCAAGGGCTGCAAATTGCTCGGTCCTAGATGTGTTCTTTTGTGTGCCAAAGGAGGAAGGCCTCTGCCGAAACAGGGCTTCACTTGTTGCCTTGCCATGGATGGTGTCAAAGTTAAGATAGAAGAGTTAGTGGCTGAAATGGGGGGACTTCTACATACTAAATCTTCATTGGATTTGAACTTTGTCATTGTGAAAAATGTTTTAGCTTCAAAGTACAAGTGGGCTTTGAATACATTGAAGAAACCAATAGTCACTTATGAATGGTTAAAACAATGCTCAGATGAGCATCGTGTTGTTCCTCAAGAGTCATACAAAGTTCTTCCTTTCTCTGGGTTAAAGATTTGTGTTACTGGAATCCCGGCAGATATCCGCAAAGAGATGGAGAAGCTTATTTTACAAAATGGTGACAAATATAAGGTGGCAAAACGATGGGGCCACATTTGTATTGTGACAAGGAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGCCTGAATGAGGAGTACTTCCCTGTTCAGCATGGATCTGTACCTTCACATAAAGTAACTAGGGACTTGACAATGCAACATAGCCAAGAAAAGGATATTAGAAAATTGCAATCTGGGACATCCTCAGGTGCTACAGATTCAAATGTACAAGTGTTTTCATGTGCTGAGTTAATGGATAGAGATCTAGAAGCTACGCAGTCAGAACAAATGTCCATTGTTTCAAATGCTCCTATATTTGCTAAGGAGGCAGATGCTGAACCTCGTCAGTCGCAGACCAACAGTAAATTGAACTTTGATGGTGTTGTTGCCAATGATTCTGAATCTGATGACAATGATATGTACTTATCAGAGTGCAGAATAATACTAGTTGGTTTTGAAGCTTGTGAAATGAGGAAACTAGTTAATATGGTGCGTAAAGGTGGAGGCTCCCGGTATATGTCTTTTAATGACAAATTGACACACATAATAATTGGGAATCCTAATGAAATGGAAAAGAAGGAGGTGAGGCATCTTGCTGCTTTTGGTGTAATTTATGTTGTTAAAACTGCATGGCTTGAAGATTGTGATCGTGAAAAGAAACAAGTCCCTGTTCTTAGGAGACACATTGCTCATGATCTACTTCATCCAAAAGCAAGCTTGGTTAAGGGAGCAGTGACAGGCAGTATGCCAATGGATCACTGTAAAAGCTCTAGCTTTCATCAAAGCTCGCAGCAGGTGGAGTATGAAATTGTAAAGCCAGAATCCTTGGAGAAAAGAAAAGAAGAGAAAGAAGATATTGGTATAAATGGTCACTCATTCAGTAAAGCAATAGGCAGAACTAAGCTGCAAAATCAACGTGCTGATAATAAATTGAGCTCACAAAGAATGACCCCACATGAATCCTGTGTTCAATACATGAAGTCTGCAAATGTTTTCAGACAGAAATTATTTTGTTTCTCAAATTTATTTCCCGAAGAAAAGAGAGGTGAGATTGTTGAATGGATAAGTCAAGGGGGAGGAGAGATAATAAATGGGCAAACAAAACAAAGTGCCGACTACATTATTGAGTGTCATGGTGTAACACCCATGGAAGGTGATTCCAAGAGTTTGTATATTTCCAGTCATTGGATACGATCTTGTTTGGAGGCTGGATCCTTGCTGGATGTTGACAGTCACATTCTTTATTCTCCACTTCCCTGCTGTGTTCCCTTGCATGGGTTTGAAAGCTTCCGGTTTTGTGTTTCTCAGTATGAGCAGAAAGACAGAATTCTCCTAAGAAACTTGTGTTATGTTCTCGGAGCAGCTAAATTTGGGGAGAAGTTGACTAAGAAGGTTACCCATTTGTTATGTAAATTCACCAATGGGCCAAAGTATGAGGGTGCTTGTAAATGGGGGATTCAGTCAGTTACATCTGAATGGATATTTGAATGTGTCAAACAGAATGGGGTTGTTGCCATTGATCAATTTTTACCAAAAGAAGTCACTGCTCAAGACCGAGAGGCAGGAGTTTGCACCGTGAGTCAATTTCCTACCCAGGCTGTTCAAATGATAAGTGACATGCCCTCCCAGTTTTCAAGTCAGTCACATACTTTGAGAAGCATGACAAATAAAAATGTTGCGTGTGGAGTTGATAATCATGAGACAAGTTTTAAGAAACCTAGTTGCAAAAAGGCAAGGTTTTTAGAGGAATCTTTCGCGCCCAATAACATGTCTCCAGCATCAAATTCAGGTATTCATGCCTATGACAAGAATTTTTCCGGAGACAATATGCTTATAGATTCTGTTCCTGATGTTGCTGCTGCTATTGAGGACTTGTTAGATCAGACTAGTAAGATGCATGATCAGAGGTCCCCAGCACAGACAGGGTGTGAGAGAAGTAATAGATTTACCCATCTGATCGTTCAGTCCTTGGTGAAGATAACTCCAATCCTCATACAGTCTTTGGATTATCTAAACACTGAAAAGATGATGATGGGGAGGCTTCTCAAGGCAGAAGAGCAGGAATATATGATGGTTGTTAGTTATGAAGAAGATTTATTAGGAAGGCAAATGCTCATAGACAGGGTCCGAACTCGAAGTAGTCTGCACGAATCACAGGTAGCGTCCGTGGAATTTGAAGAGGCACGGCAAAGAATGTGGGAGAGTAGCAGATTTGCTGTCGCAGGAAAAGCAGCGGAAATTGTGAGCCTTAGTGGCCCTGGCCATTGGCAAGTGTTCTGATGCAGGGGAAGATTTTTCTGCTACTTGCACTGTCGTCGGGCATGCTCTGCAACCTGTGCACAGTTGCTGCCACCTTCCTCTTGCCACCGCTGGCCTTCCAGTCCAACTTCAGTCTCTGCATTCTGCAATGAGAGTTGATTAGAAGTTGTCAAGAATCAACTTCCAGAATTTGAAGCCTTGATGCAGTAGCTCATGATCAGTAGAATTTTATTACAGTGGAGAAGGCAAAGATGAAACTCCTATGCAATGTAAAAGCTTATTAATCTCGACTGCTACGGTGTTGGCCCTATAGGATGTTGAAATTGGTTTGAATAAG 3471 0.4203 MLKTKAFHGANVFMSRNLVPPEVFDALHDAVKNSGAQLHLCCDPSRNGPNDYHVISSSKHEKFDDLKSKGCKLLGPRCVLLCAKGGRPLPKQGFTCCLAMDGVKVKIEELVAEMGGLLHTKSSLDLNFVIVKNVLASKYKWALNTLKKPIVTYEWLKQCSDEHRVVPQESYKVLPFSGLKICVTGIPADIRKEMEKLILQNGDKYKVAKRWGHICIVTRKWFDQSIARRACLNEEYFPVQHGSVPSHKVTRDLTMQHSQEKDIRKLQSGTSSGATDSNVQVFSCAELMDRDLEATQSEQMSIVSNAPIFAKEADAEPRQSQTNSKLNFDGVVANDSESDDNDMYLSECRIILVGFEACEMRKLVNMVRKGGGSRYMSFNDKLTHIIIGNPNEMEKKEVRHLAAFGVIYVVKTAWLEDCDREKKQVPVLRRHIAHDLLHPKASLVKGAVTGSMPMDHCKSSSFHQSSQQVEYEIVKPESLEKRKEEKEDIGINGHSFSKAIGRTKLQNQRADNKLSSQRMTPHESCVQYMKSANVFRQKLFCFSNLFPEEKRGEIVEWISQGGGEIINGQTKQSADYIIECHGVTPMEGDSKSLYISSHWIRSCLEAGSLLDVDSHILYSPLPCCVPLHGFESFRFCVSQYEQKDRILLRNLCYVLGAAKFGEKLTKKVTHLLCKFTNGPKYEGACKWGIQSVTSEWIFECVKQNGVVAIDQFLPKEVTAQDREAGVCTVSQFPTQAVQMISDMPSQFSSQSHTLRSMTNKNVACGVDNHETSFKKPSCKKARFLEESFAPNNMSPASNSGIHAYDKNFSGDNMLIDSVPDVAAAIEDLLDQTSKMHDQRSPAQTGCERSNRFTHLIVQSLVKITPILIQSLDYLNTEKMMMGRLLKAEEQEYMMVVSYEEDLLGRQMLIDRVRTRSSLHESQVASVEFEEARQRMWESSRFAVAGKAAEIVSLSGPGHWQVF 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01980 962 ProSiteProfiles BRCT domain profile. 530 617 IPR001357 -
Pste8g01980 962 ProSiteProfiles BRCT domain profile. 106 173 IPR001357 -
Pste8g01980 962 Gene3D BRCT domain 328 429 IPR036420 -
Pste8g01980 962 Gene3D BRCT domain 34 93 IPR036420 -
Pste8g01980 962 SUPERFAMILY BRCT domain 175 239 IPR036420 -
Pste8g01980 962 Gene3D BRCT domain 94 175 IPR036420 -
Pste8g01980 962 Pfam BRCT domain, a BRCA1 C-terminus domain 532 614 IPR001357 -
Pste8g01980 962 FunFam Transcription coactivator 322 432 - -
Pste8g01980 962 SUPERFAMILY BRCT domain 627 715 IPR036420 -
Pste8g01980 962 Pfam twin BRCT domain 634 696 IPR001357 -
Pste8g01980 962 ProSiteProfiles BRCT domain profile. 630 714 IPR001357 -
Pste8g01980 962 SMART BRCT_7 627 704 IPR001357 -
Pste8g01980 962 SMART BRCT_7 173 229 IPR001357 -
Pste8g01980 962 SMART BRCT_7 88 163 IPR001357 -
Pste8g01980 962 SMART BRCT_7 532 607 IPR001357 -
Pste8g01980 962 SMART BRCT_7 342 422 IPR001357 -
Pste8g01980 962 CDD BRCT_TopBP1_rpt2_like 630 704 - -
Pste8g01980 962 Gene3D BRCT domain 199 242 IPR036420 -
Pste8g01980 962 ProSiteProfiles BRCT domain profile. 340 432 IPR001357 -
Pste8g01980 962 FunFam Transcription coactivator 527 623 - -
Pste8g01980 962 SUPERFAMILY BRCT domain 533 619 IPR036420 -
Pste8g01980 962 SUPERFAMILY BRCT domain 339 426 IPR036420 -
Pste8g01980 962 Pfam BRCA1 C Terminus (BRCT) domain 99 159 IPR001357 -
Pste8g01980 962 MobiDBLite consensus disorder prediction 254 274 - -
Pste8g01980 962 CDD BRCT_TopBP1_rpt2_like 175 229 - -
Pste8g01980 962 Gene3D BRCT domain 627 740 IPR036420 -
Pste8g01980 962 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 9 853 - -
Pste8g01980 962 CDD BRCT 106 159 - -
Pste8g01980 962 SUPERFAMILY BRCT domain 59 172 IPR036420 -
Pste8g01980 962 Gene3D BRCT domain 527 623 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01980 1 918 Core DNA Replication Machinery Family AT1G77320 45.544 0.0 785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01980 8 15579911 15603247 Pste8g01980 8 15579911 15603247 ECH