Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01978 AACTTAATATTAAATTGGAGTGTTCAAAATGCTGCTGTTTTTTATGCACCCAGCCTTAGGTTTTGCGCAGAAGTGAGAAGAGAAGCAGAAAACCTCCGCAACCTCGTTTGCGATTCCGCCAGAGTTCCGTGCCTCCGTTCTCCGGCGAAGCTCCGTTGCGATTCCAGTGAGAACCTCGCTTTCGGCAGCGACAGCTCCGTTCTCGACTTCGACCTCGCTGTCGAAGTCCCTGCGATTCCGGCGACGACACCTTGCGTTCCCTGGCTCCGGCGGTCTAAGCTTCCTTGCGATTCCAACATCCTTCTGAGTTCTGACCATCTCGACTTCGCATTTGCATTCTCCCGTTCTCCGTGGTTCAAGCCACAGACCCAACAACTATCACAACTACACCACACGCCACCGCTGAGAACACAACCCTGCTTCCTCTCTCTGTTGTCAAGGATATGCGTCAAGAATCTCCCAAAACATGTTGCGGAGGATGAACTACGGGAGTTCTTTTCTGAAAAAGGAGTAATCACCGATGTTAAGCTCATGCGTACAAAAGATGGTAAGAGTCGCCAGTTTGCATTTATTGGATACCGCTCTGAAAATGAAGCTCAAGAAGCCATCCGGTATTTTGATAAATCTTTCCTTCGTACGTCTAAAATTATTTGCGAGGTGGCTAGAAAACATGGGGATGAAAATCTTCCTCGGCCATGGAGTCGATATTCGAAGAAGAAAGAGGAGAAAGAGACCACTCTGGATGTGGATAAACAAGATGGAGCTAAGGAACGAGGAAAAATTTTGAAGGGTGGTGTTGGTGTTGATGTTGATAACCCAGAGCTTGAGGAATTTCTTCAGGTCATGCAGCCCCGGGTCAAGTCTAAAATGTGGGCGAATGATACGACAGTTGCAACCAATGTTGGCGACAACCAAGCAATGTCAAATAAAGATAATGTAGGCGGATCGGTTGTTGTTGATCAAAGTGTTTCATCAGAAGACAAGTCTCTGGATAATTCTGATCCTAGAAAGTCACTTGAGCCTGAACGTGATGAGGTTGAACGTGATGAGGTAATTTCTAATATGGATTATTTCAAGAGTAAGGTGACCAAAGAGTGGTCTGATTCTGAAGGTAGTGATGATGATGACGACAAAGACAATGATTCATCATGCATTGACAATGACAACAAAAATGATCATAGTGATGCTAGTGAAGATGAGGAAAATTGTGATACAAGAATTGGTGCTCGAGAGGTAGACTTAGAGGGAGAAGAAGATACTAATGGGGAGGATATTACCCATCAAAAGGCTCAGGTGAAAGTGACTGAGCAAAGGGGGGAATTATCAAATCCAGAAGACGAGAAAAAAGTTTTTGATTCCTGTCGTTTGTTTGTCCGTAATCTGCCATATACGACCACTGAGGAGGAGCTGGAAGAACATTTTAGTCACATTGGTAGTGTCTCCCAGGTTCATCTAGTTGTTGATAAAGATACAAAACGATCAAAAGGAATAGCATATATTCTTTATACAACTCCAGAATTTGCAGACAGGGCTCTAAAACAGTTGGACAATTCAATCTTTCAAGGAAGATTATTGCATGTAATGCCAGCTTTACAAAAACCATCAGCTAATCAAGAGAACAATGTTTTGAAGGATCAAAACTCTAAAACCCTCAAACAACAGAGAGAGGAAAAGAGGAAAGCAGATGAAGCCAGCGGAGACACTAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACAATTGTGGAAAACATTGCTCGGAAATATGGTGTTAATAAAAGTGATTTTCTTGATCGAGAAGCTGATGATCTTGCTGTAAGAATTGCTTTGGGAGAGACTCAAGTGATTTCAGAAACAAAAAAGGCATTTAAAAATGCTGGAGTGAATGTGGAGGCTTTGGAGAAACTTGCAAATAAAAAAATAGATGGATTAAAAAGAAGTAATCATGTGCTTTTAGTGAAGAACTTGCCATATGGTTCTACAGAAAATGAACTAGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCGCTGGTTGTTTTCCTTGAACCAGCGGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCATTATACTTGGAGTGGGCTCCTTCCAATATTCTTAGCCAAAGTTCAACATCTAAAAATAATGAAATAAGTGGTGCAATTGGTGAAAATGATGCCAAGAGGCAGATATTGGAGCAACAAGTGGAAAGAATAACAGATGTGGATATTGATCCAGACAGAGTACAGGCTCGGTCCCTGTTTGTCAAGAATCTAAATTTCAAGACAACAGATGAAAGTCTGCGAAAACATTTTAGTGAACTCATGAAAGAGGGGAGAATCTTGAGTGCTAAGGTGAAGAAGCATTTGAAAAACGGGAAAAATGTTTCTATGGGGTTTGGATTTATTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGTAGAGATTTACAGGGGACAGTTTTGGACAACCATGCTCTTGTTTTACAACCTTGTCATGTCAAGAACGATGGACATAAACAGCAGACAATTGAGAAGGATAAGAGTTCAACAAAATTGCTTGTAAGAAATGTTGCTTTTGAGGCAACAGAAAAGGATCTGAGACGATTGTTTAGCCCATTTGGCCAGATTAAAAGCTTAAGGTTACCAATGAAGTTTGGAAACCATAGAGGCTTTGCATTTGTAGAGTATGCGACTCAGCAGGAGGCACAAAATGCCCTCAAAGCACTTTCAACCACCCATCTCTATGGGAGGCATCTGGTGATAGAGAGAGCAAAAGAAGGTGAGAGTTTGGAAGAACTGCGTGCTAGAACAGCTGCTCAATTTAGTGATGAACAGAATGGATTTAAAAAATTATCCAAGAAAAGGAAACAATTTGACATCTTAGATGATGAAGGGAAGATGAAGTTTGGAAGGATTGCTGACTAGTGCGGCTCCAAGGATCTAAGCATTGTTTGTGCATATGCCCTGAAAATTCAGGGATCACAATTTTGTCATAGGTTCTAAATTTATGTATGCATGCCATAGTGTTAAAACAGTTTCATAGTTTATTTAGGTTTCTATTCTTTATCCTTAATCCCATCTCCCACAATTTTGTCCGCATATTTACATTAAACTTTTATATTCCCATAATTTAATATCCCAT 3199 0.4104 NLILNWSVQNAAVFYAPSLRFCAEVRREAENLRNLVCDSARVPCLRSPAKLRCDSSENLAFGSDSSVLDFDLAVEVPAIPATTPCVPWLRRSKLPCDSNILLSSDHLDFAFAFSRSPWFKPQTQQLSQLHHTPPLRTQPCFLSLLSRICVKNLPKHVAEDELREFFSEKGVITDVKLMRTKDGKSRQFAFIGYRSENEAQEAIRYFDKSFLRTSKIICEVARKHGDENLPRPWSRYSKKKEEKETTLDVDKQDGAKERGKILKGGVGVDVDNPELEEFLQVMQPRVKSKMWANDTTVATNVGDNQAMSNKDNVGGSVVVDQSVSSEDKSLDNSDPRKSLEPERDEVERDEVISNMDYFKSKVTKEWSDSEGSDDDDDKDNDSSCIDNDNKNDHSDASEDEENCDTRIGAREVDLEGEEDTNGEDITHQKAQVKVTEQRGELSNPEDEKKVFDSCRLFVRNLPYTTTEEELEEHFSHIGSVSQVHLVVDKDTKRSKGIAYILYTTPEFADRALKQLDNSIFQGRLLHVMPALQKPSANQENNVLKDQNSKTLKQQREEKRKADEASGDTRAWNSLFMRPDTIVENIARKYGVNKSDFLDREADDLAVRIALGETQVISETKKAFKNAGVNVEALEKLANKKIDGLKRSNHVLLVKNLPYGSTENELAKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYKDAPLYLEWAPSNILSQSSTSKNNEISGAIGENDAKRQILEQQVERITDVDIDPDRVQARSLFVKNLNFKTTDESLRKHFSELMKEGRILSAKVKKHLKNGKNVSMGFGFIEFDSPETATNVCRDLQGTVLDNHALVLQPCHVKNDGHKQQTIEKDKSSTKLLVRNVAFEATEKDLRRLFSPFGQIKSLRLPMKFGNHRGFAFVEYATQQEAQNALKALSTTHLYGRHLVIERAKEGESLEELRARTAAQFSDEQNGFKKLSKKRKQFDILDDEGKMKFGRIAD 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01978 993 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 869 945 IPR000504 GO:0003723
Pste8g01978 993 SUPERFAMILY RNA-binding domain, RBD 128 226 IPR035979 GO:0003676
Pste8g01978 993 MobiDBLite consensus disorder prediction 322 446 - -
Pste8g01978 993 CDD RRM4_RBM19_RRM3_MRD1 649 720 - -
Pste8g01978 993 MobiDBLite consensus disorder prediction 327 368 - -
Pste8g01978 993 Gene3D - 861 971 IPR012677 -
Pste8g01978 993 Gene3D - 642 737 IPR012677 -
Pste8g01978 993 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 223 IPR000504 GO:0003723
Pste8g01978 993 SMART rrm2_1 147 219 IPR003954 GO:0003676
Pste8g01978 993 SMART rrm2_1 870 941 IPR003954 GO:0003676
Pste8g01978 993 SMART rrm2_1 455 528 IPR003954 GO:0003676
Pste8g01978 993 SMART rrm2_1 770 850 IPR003954 GO:0003676
Pste8g01978 993 SUPERFAMILY RNA-binding domain, RBD 444 539 IPR035979 GO:0003676
Pste8g01978 993 SUPERFAMILY RNA-binding domain, RBD 757 855 IPR035979 GO:0003676
Pste8g01978 993 Gene3D - 738 860 IPR012677 -
Pste8g01978 993 Gene3D - 119 229 IPR012677 -
Pste8g01978 993 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 649 721 IPR000504 GO:0003723
Pste8g01978 993 FunFam Nucleotide/nucleic acid binding protein 765 860 - -
Pste8g01978 993 CDD RRM6_RBM19_RRM5_MRD1 869 943 - -
Pste8g01978 993 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 454 532 IPR000504 GO:0003723
Pste8g01978 993 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 771 845 IPR000504 GO:0003723
Pste8g01978 993 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 651 712 IPR000504 GO:0003723
Pste8g01978 993 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 456 526 IPR000504 GO:0003723
Pste8g01978 993 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 871 938 IPR000504 GO:0003723
Pste8g01978 993 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 215 IPR000504 GO:0003723
Pste8g01978 993 SUPERFAMILY RNA-binding domain, RBD 646 734 IPR035979 GO:0003676
Pste8g01978 993 MobiDBLite consensus disorder prediction 549 565 - -
Pste8g01978 993 FunFam Multiple RNA-binding domain-containing protein 1 863 969 - -
Pste8g01978 993 CDD RRM5_RBM19_like 770 848 IPR034423 -
Pste8g01978 993 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 455 555 - -
Pste8g01978 993 SMART rrm1_1 870 941 IPR000504 GO:0003723
Pste8g01978 993 SMART rrm1_1 147 219 IPR000504 GO:0003723
Pste8g01978 993 SMART rrm1_1 770 848 IPR000504 GO:0003723
Pste8g01978 993 SMART rrm1_1 650 717 IPR000504 GO:0003723
Pste8g01978 993 SMART rrm1_1 455 528 IPR000504 GO:0003723
Pste8g01978 993 Coils Coil 544 564 - -
Pste8g01978 993 MobiDBLite consensus disorder prediction 383 446 - -
Pste8g01978 993 FunFam Multiple RNA-binding domain-containing protein 1 640 742 - -
Pste8g01978 993 CDD RRM1_MRD1 146 221 - -
Pste8g01978 993 Gene3D - 422 570 IPR012677 -
Pste8g01978 993 FunFam RNA-binding motif protein 19 143 244 - -
Pste8g01978 993 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 769 852 IPR000504 GO:0003723
Pste8g01978 993 SUPERFAMILY RNA-binding domain, RBD 865 947 IPR035979 GO:0003676
Pste8g01978 993 MobiDBLite consensus disorder prediction 535 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01978 Pste-Chr8 15541733 15560006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01978 760 961 Eukaryotic Initiation Factors Gene Family AT1G49760 29.108 8.23e-13 70.5